Gene detail

Gene detail information of Glyur004538s00039587

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G36930.1	1.00E-111	Disease resistance protein (TIR-NBS-LRR class) family
NR	KHN24488.1	0	TMV resistance protein N [Glycine soja]
COG	YP_007069965.1	6.00E-11	small GTP-binding protein [Leptolyngbya sp. PCC 7376]
Swissprot	tr\|Q40392\|TMVRN_NICGU	4.00E-134	TMV resistance protein N
trEMBL	tr\|K7MIV1\|K7MIV1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G33681.2}

Sequence

Transcript Sequence

>Glyur004538s00039587.1
ATTCCCAACTTTTTCCATTGCATATCCCTGTTTCCCACCCTCGCTTCTAACGAAAACAGAGGCCAAAGAGACCAGTCGTTCTGGCACTTTGGATTACTCTCTCAAAGCTAAGCTCGGACCCACAATCGACACCACCCTGCGACCACCATTTCCACCCANGGCCACAGTGGAGTAAGTAACCCTCGCAACAGCACTTCGTGGATCGTAACTACTTTTGTGAATTTTCTGTTTCTTTCCTTTCTTCTTTAATCTTTATGCATCATATCATATCTATTTATTTATCTGTTTTTAGTTTTTAATTTTGGATAGTCAACCCTTTAATTTAATACACCAGGCTAGTTGGGTGAGAATGAAATCTTAGATGAGCTCGGTTGACCCTTTTCTTATCTAAAGTCAGTGTTTTCTAAAGTGAGGTGCTGAAGTAGCTTTCTTCTCATGGATGAACCACCGTCGTGTTCCTCTTCATTCAGCTACGGATTCACCTACGACGTGTTCCTCAGCTTTAGAGGCCCTGATACTCGCCACGGTTTTATTGGCAATCTCTGGAAAGCCCTTCTTGATAAGGGAATCCGCACCTTCATGGATGACGAGGAGCTTCAGAGAGGGGATGAAATCACACCATCACTTGTCAAGGCCATTGAAGAGTCCAGAATTGTCATCCCTGTGTTCTCTACTAACTATGCATCTTCTTCGTTTTGCTTAGACGAACTTGCTAGGATATTTGACTGCATCAGGAGCAAGGGCCGATTGGTTTTGCCCATTTTCTACGACGTGGATCCTTCCCATGTGCGCTATCAGACCGGGAGTTATGGAGAGGCACTAGCTAGCCATGAAGAGAGGTTCAGAAATTTCAAGGTGAATTTCAATGATAACATGGAGAGGTTGCAGAAATGGAAGATGGCTCTTGAGCAAGCAGCTAACTTTTCCGGTTGGCATTTCAAACTTGGAAATGAATATGAACATGAGTTTATTGCGAAGATAGTTAAAGAGGTCTCTTACAAGATCAATCGTGCTCCTTTGCATGTTGCTGATTACCCAGTTGGATTGGAGCGGCGGGTGTTAGGAGTAAAGTCACTTTTAGATGTTGGGTCTGATGATGGAGTCCACTTGGTAGGGATCTATGGAATTGGTGGAATGGGTTTATGTTTTCTTGATGATGTGAGAGAGAAGTCAATGAAACATGGATTGGTACATCTCCAAGAGATGCTTCTTTCTGAAATAGTTGGAGAGAAAGATATTAAAATAGGAAGTGTCAGTAAAGGAATTTCATTAATAAAGCATAGGCTCCACCGGAAGAAGATTCTTTTAATTCTTGACGATATTGACAAACTTGAACAGTTGCGGGCAATTGTTGGAGAACCAAACTGTCATCATAACAACTCGAGACAGGCATTTGCTAGCAAGTCATGGGTTGAGAGAACATATGAGGTAGACGATTTAAATGAGGAAGAAGCACTTGAATTGCTTAGTTGGAATGCTTTTAAGAGTGATAAAGTTGATCCAAATTACAAGGACATTTCAAACCAAGTAGTAGCTTATGCTTCTGGCCTTCCGTTGGCTTTGGAAGTAGTAGGTTCCCTTTTAATTGGGAAGAGCATAAAAGAATGGGAATCTGCATTAGATCAGTATAAAAAAACTCCTAACAAAAAGATCCAAGATATACTTAAGGTAACCTATAATGCTTTAGAGGAAGATCATCAGAAAATTTTTCTTGACATTTCCTGTTGCTTTAAAGGATATAGATTGGAAGAGGTTGAAGATATACTTTGTGCTCATTATGGTGTCTCCATGAAATATGGTATTGGAGTGTTGGCTGATAAATGTCTCCTAAAGATTGAGAATGGTTGTGTGACATTTCATGATTTGATTGAGGTCATGGGTAAAGAAATTGATCGATGGGAATCACCGAAAGAGCTTGGGAAACGTAGAAGGTTATGGTTCCACAAAGACATATTTCAAGTTTTAGCAGAAAATATGGGAACTAGTGAGATTGAAATCATACATCTGGATTTCCCCTTATTTGATGAAGATGAAGAAGCATTAGTAGAATGGGATGGAGAGGCCTTCAAGAAGATGGAAAACCTCAAAACACTTATTATTAGAAATTGTTATTTTTCCAAAGGTCCCAAACATCTTCCAAATAGTTTAAGAGTATTAGAGTGGTGGACATATCTTTTACAGGATTTACCATATGATTTTCGTCCAAAGAAACTTACCATATGCAAGTTACCTGAAAGTTGTTTTACATCCCTCGAGTTGGCTGGCTTATTGAAGGCAAGTAAGTTCGTGAATCTAAAAGTATTGAATTTTGACGGAACTGAATGTTTGATACAGATACCTGATTTATCTAGTCTTCGAAATTTAGAAAAATTGTCATTTGAATGTTGTGAGAGTTTAGTTGCAATTCATGATTCGATTGGATTCTTGGATAAACTTAAAATCTTGAGTGCTTTTGGTTGCACCAAGCTTAGGAGTTTTCCACCCATCAACTTGCCTTCTCTTGAAGAACTCGAGCTTTCATCTTGCTCTAGTCTTGCGAGTTTTCCAGAAATACTAGGAAAGATGGAAAATATGACACAGCTTGAGTTGAAGCACACTCCAATAAAAGAATTGCCATTTTCGTTTAAAAATCTTACTCAGCTTCGAGATTTAGCACTGCTTGATTGTGGAAATGTTCAGTTACCAAGTAGCATTGTCATGTTGCCAGAATTGGCTGAGATTTTCGCTATGGAGTGCAAAGGGGGGCTATTGCCAAAACAGGATGAGGGTGAAGAAAAAGTGAGCTCAATCTCTTCAAATGTAAAATGTCTTTGCCTTTCAGGATGCAATCTGTCAGATGAATATTTTTCCACAGTTTTTGCATGGTTGCCTAACGTGAAAGAGTTAGAGCTATCGAGCAATAATTTCACATTTCTTCCTGAACACATTAAAGAATGCCGCTCTTTAACATTGCTTAATCTGGATAATTGTGAGCATCTTAGAGAAATTAGAGGGATTCCGCCAAATTTAGAATATTTCTCTGCAGGAAACTGCAAATCCCTGACTTTTTGGAGTACAAGCATACTATTGAATCAGGAACTACATGAGGATGCAAATACCATGTTTTGTTTGCCAGGAACAAGGATTCCAGAGTGGTTCAACCACCGCAGCACGGGACCTTCGGTTTCTTTCTGGTTTCGTAACAAGTTCCCTGTCATAGCTCTCTGTTTTGTTGTTGGACCGATGGGTAAGGACTCTATATTATTTAAACCCATCGTCACTGTCAATGGCAATGCAATGGAGATAAAGATATTAACTGGAAAAAGATACATGAAGTTTGAAGATAATCTGGATAAAGTACTGTTAGAAAATGAATGGAACAATGTGATGGTTTCTATTGGTATTGAGTTTGAATCTATCCCTAAGGAAATAGTTGTGAAGGGAACTGGAATCCATGTAACCAAACAAAATAATAACATGGAAGATATCCGATTCACTGATCCTTATACCCTACCTTTTCTTAAAGAGAAGCATAGATTTTTGGACATAGGATATTCTCATAGACAATTTATGCAGCAGCATACAAAAATGGTTTTATTGGAACCGCGTGTGGGACATGGCAGTAAGTCGCTTTCATTGCTTCCACCTACAGCATTTGACAATAAT

Protein Sequence

>Glyur004538s00039587.1
MDEPPSCSSSFSYGFTYDVFLSFRGPDTRHGFIGNLWKALLDKGIRTFMDDEELQRGDEITPSLVKAIEESRIVIPVFSTNYASSSFCLDELARIFDCIRSKGRLVLPIFYDVDPSHVRYQTGSYGEALASHEERFRNFKVNFNDNMERLQKWKMALEQAANFSGWHFKLGNEYEHEFIAKIVKEVSYKINRAPLHVADYPVGLERRVLGVKSLLDVGSDDGVHLVGIYGIGGMGLCFLDDVREKSMKHGLVHLQEMLLSEIVGEKDIKIGSVSKGISLIKHRLHRKKILLILDDIDKLEQLRAIVGEPNCHHNNSRQAFASKSWVERTYEVDDLNEEEALELLSWNAFKSDKVDPNYKDISNQVVAYASGLPLALEVVGSLLIGKSIKEWESALDQYKKTPNKKIQDILKVTYNALEEDHQKIFLDISCCFKGYRLEEVEDILCAHYGVSMKYGIGVLADKCLLKIENGCVTFHDLIEVMGKEIDRWESPKELGKRRRLWFHKDIFQVLAENMGTSEIEIIHLDFPLFDEDEEALVEWDGEAFKKMENLKTLIIRNCYFSKGPKHLPNSLRVLEWWTYLLQDLPYDFRPKKLTICKLPESCFTSLELAGLLKASKFVNLKVLNFDGTECLIQIPDLSSLRNLEKLSFECCESLVAIHDSIGFLDKLKILSAFGCTKLRSFPPINLPSLEELELSSCSSLASFPEILGKMENMTQLELKHTPIKELPFSFKNLTQLRDLALLDCGNVQLPSSIVMLPELAEIFAMECKGGLLPKQDEGEEKVSSISSNVKCLCLSGCNLSDEYFSTVFAWLPNVKELELSSNNFTFLPEHIKECRSLTLLNLDNCEHLREIRGIPPNLEYFSAGNCKSLTFWSTSILLNQELHEDANTMFCLPGTRIPEWFNHRSTGPSVSFWFRNKFPVIALCFVVGPMGKDSILFKPIVTVNGNAMEIKILTGKRYMKFEDNLDKVLLENEWNNVMVSIGIEFESIPKEIVVKGTGIHVTKQNNNMEDIRFTDPYTLPFLKEKHRFLDIGYSHRQFMQQHTKMVLLEPRVGHGSKSLSLLPPTAFDNN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04538	59	4703	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004538s00039587.1	PF01582.15	TIR	19	158	1.80E-34
Glyur004538s00039587.1	PF00931.17	NB-ARC	252	439	1.80E-25
Glyur004538s00039587.1	PF13504.1	LRR_7	812	828	2.3

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.844
SRR1783600	control	2.003
SRR1783602	moderate drought stress	2.536
SRR1811619	moderate drought stress	2.622

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.156
DRR006520	Root Summer glycyrrhizin high producing strain	2.253
DRR006521	Root Winter glycyrrhizin high producing strain	2.511
DRR006522	Root Winter glycyrrhizin high producing strain	2.516
DRR006523	Root Summer glycyrrhizin low producing strain	1.572
DRR006524	Root Summer glycyrrhizin low producing strain	1.651
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.467
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.461

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.525
SRR2868004	Drought Stress (root)	7.740
SRR2967015	Control (root)	7.749

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.421
SRR9715740	Leaf	6.479
SRR9715741	Leaf	5.733
SRR9715739	Root	0.408
SRR9715742	Root	2.262
SRR9715743	Root	2.366

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.827
SRR8749028	MeJA induced 9h	2.497
SRR8749029	MeJA induced 9h	0.726
SRR8749030	Uninduced	1.102
SRR8749031	Uninduced	1.262
SRR8749032	Uninduced	0.728

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.756
SRR8400027	Control - Root	6.582