Gene detail

Gene detail information of Glyur004535s00043735

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G13250.1	2.00E-93	galacturonosyltransferase-like 3
NR	XP_004502731.1	5.43E-150	PREDICTED: probable galacturonosyltransferase-like 3-like isoform X1 [Cicer arietinum]
COG	YP_007062961.1	3.00E-12	LPS:glycosyltransferase [Synechococcus sp. PCC 6312]
Swissprot	tr\|Q0V7R1\|GATL3_ARATH	9.00E-119	Probable galacturonosyltransferase-like 3
trEMBL	tr\|G7J889\|G7J889_MEDTR	5.00E-146	CAZy family GT8 glycosyltransferase {ECO:0000313\|EMBL:AES72587.1}

Sequence

Transcript Sequence

>Glyur004535s00043735.1
ATGATAAATTCAGACGCGAATCGCGATAATCACGTGCAGAGAAACCTTCACCGCATGCCCTCACGGGCATCCAAATCCTCAATCACAACCCCAAATCACAACCCCTGGCTTCCTACATCTCGGGCCACACCAACCGAAATCAAAGCGAAATACCGAAACTACCCCTCAACTGCCACCGACACTCACAAGGACCCTTGCACTTTTCTTTATCGCCGCCGCGGCGTGTTTTCCGGTGACCGAGAGCTCCGGCGAACTATCGTCATTCCGGGAAGCACCGGCATTCCGCAACGGGAGGGAATGTCCGCCGCGCACGGCGCGTCGGCGATCCACATCGCGATGACGCTGGACGCGACCTATCTCCGTGGCTCCGTCGCCGGCGTGTTCTCCGTCCTTCAACACGCGTCGTGTCCGGAGAATGTCGTCTTCCACTTCGTCGCCACCACGCACCGCCGGCGGCAAGAACTCCGGCGCGTCATCGCATCCACCGTTCCGTACCTAAGCTTCCGCATCTACCACTTCGACGCGAACCTCGTGAGGGGTAAGATCTCGTACTCCATCCGACGCGCGCTCGATCAGCCCCTAAACTACGCGCGCATGTACCTCGCCGACCTAGTTCCGGCCACCGTCCGGCGAATCGTCTACTTCGACTCCGACCTCATCGTCGTCGATGACGTGGCAAAGCTTTGGGGGATCGACCTAAGGGATCACCTTCTCGGTGCTCCAGAGTATTGCCACGCGAACTTCACCAACTACTTCACGCACCGGTTCTGGTCTAACCCGATTTATGCGGCGTCGTTTAAGGGACGCGGCGCGTGTTACTTCAACACGGGCGTGATGGTGATTGATTTGTGGAAGTGGCGTGAGGGGAGATACACGGAGAAGCTTGAGAATTGGAATGCGGATCCAGAAAAGGAGTCGGATCTACGAGCTGGGGTCTCTTCCGCCGTTTCTTCTTGTGTTCGCCGGAAAACAGTGGAGCACCGGTGGAACCAGCATGGGCTCGGTGGTGACAACGTGGAAGGGTTGTGTCGTGATTTGCACCCTGGTCCTGTGAGCCTTTTGCATTGGAGTGGGAAGGGAAGCCGTGGCTCAGAATCGATTCAAAGAAGCCTTGTCCCTTGGATAGCTTGTGGGCACCCTATGATCTCTTTCGCCACTCTCCGTCGGTGTTCAGCGATACCTAGTTGTTGGGGTGCATGGCATGTGCCGTGGAGGGGTGTGTCACCTGAGTGTGGCTCGGAGTGTGAAAAGACGAAAGAGGACACAGATGTGTATACGTGGATAAAGGGTGAGGGTGGTGTTGTGGTTTTGGAATTGGATGATACGGTGACGTGGTTGGATACTTGGATATGGTATGATGAGGATTTTGCTGATTGGGTGCATGGGACTATGTACAGTATTGGTAGATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04535	2295	3924	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016757 transferase activity, transferring glycosyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004535s00043735.1	PF01501.15	Glyco_transf_8	110	359	4.70E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.018
SRR1783600	control	22.431
SRR1783602	moderate drought stress	16.148
SRR1811619	moderate drought stress	16.214

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.153
DRR006520	Root Summer glycyrrhizin high producing strain	16.743
DRR006521	Root Winter glycyrrhizin high producing strain	0.235
DRR006522	Root Winter glycyrrhizin high producing strain	0.091
DRR006523	Root Summer glycyrrhizin low producing strain	14.691
DRR006524	Root Summer glycyrrhizin low producing strain	13.766
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.417
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.753

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.089
SRR2868004	Drought Stress (root)	8.918
SRR2967015	Control (root)	12.179

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.264
SRR9715740	Leaf	3.632
SRR9715741	Leaf	5.025
SRR9715739	Root	70.993
SRR9715742	Root	34.107
SRR9715743	Root	41.559

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	57.175
SRR8749028	MeJA induced 9h	23.591
SRR8749029	MeJA induced 9h	41.389
SRR8749030	Uninduced	7.569
SRR8749031	Uninduced	4.101
SRR8749032	Uninduced	8.285

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	40.332
SRR8400027	Control - Root	56.359