Gene detail

Gene detail information of Glyur004534s00041843

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G47710.1	2.00E-59	Adenine nucleotide alpha hydrolases-like superfamily protein
NR	XP_004494374.1	2.08E-89	PREDICTED: universal stress protein MJ0531-like [Cicer arietinum]
COG	YP_007039773.1	2.00E-17	UspA domain protein [Saccharothrix espanaensis DSM 44229]
Swissprot	tr\|Q8LGG8\|USPAL_ARATH	5.00E-12	Universal stress protein A-like protein
trEMBL	tr\|C6SXR1\|C6SXR1_SOYBN	2.00E-87	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G39840.1}

Sequence

Transcript Sequence

>Glyur004534s00041843.1
AATTAAGGTTGTGTTCCGATTAATAGTGCGGTCCACTGTTCAGTTTCCACTTTACACCTAGTAGTAAAGTCTAGAATGAGANAGAACAGAATCCCGAATAGTACGCGACTCTGTTTTAATTAAGGAACCCGATTCAAATGCTTAATAATGTAGTTGCACATACGCTTCAACCCGATGCAATTGGAATACGAATAAATTCACAGCGCACCACGGTTAGNTATACGTTTGCATCACTGAGAAAAGTAAAGTAGCATTAGTTGTAGGCAAACAAGTGTTCTAACTCAAGGTACATACATACATACATTGAGGAAAGCAAAGAGTAGTGATCAAGAGCGTATAACGTTTTCCAATTGCTCTCACTCATATCAAATTCCATGGCGGCGAAAGTGTCAGAGAAGCAAGTGATGGTGGTTGGGATCGACGACAGTGATTACAGCACCTACGCCCTACAATGGACACTGGATCACTTGTTCGCACCCAATCCCATCTTCAAAATTGTTCTTGTTTATGCCAAGCCTACTGTTAGCTCTACTGTCGGCTTCATCGGCCCTGGAACTGCTGAGGTGTTGCCTATTGTGGAAGCCGATTTGAAAAAAACTGCTTCCAAAGTTATTGAACAAGCTAAAGAACTCTGCACCAAGGCATCCGTAAAAGACATAGCAGTGGAAGTGGTGGAAGGTGATGCTAGGAATGTTCTTTGCGAGGCTGTGGAGAAGCACCATGCTTCAATATTGGTTGTGGGTAGTCATGGTTATGGGGCTATAAAAAGGGCGGTTTTAGGCAGTGTAAGTGACTATTGTGCTCATCATGCTCACTGCACTGTGATGATCGTGAAGAAGCCAAAAACCAAACACTGATATCTACATTGGCTGCGTCTGNATAGTACTACAGCAATAAAAATAGATCTTTTATAGATGTTCTTAAAAAGTTCATAACGATTGTTGGTTCCATGCCATGCTGACTTTATTCTTTAAGGTTCATTTCACTTTTTATTGTGTTCAAAATAGAACCGACAAATAATGTATGTAAGCACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04534	3725	5877	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006950 response to stress

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004534s00041843.1	PF00582.21	Usp	10	154	1.00E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.770
SRR1783600	control	8.016
SRR1783602	moderate drought stress	14.152
SRR1811619	moderate drought stress	14.324

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.769
DRR006520	Root Summer glycyrrhizin high producing strain	11.441
DRR006521	Root Winter glycyrrhizin high producing strain	16.846
DRR006522	Root Winter glycyrrhizin high producing strain	16.320
DRR006523	Root Summer glycyrrhizin low producing strain	11.195
DRR006524	Root Summer glycyrrhizin low producing strain	10.943
DRR006525	Leaf Summer glycyrrhizin high producing strain	65.447
DRR006526	Leaf Summer glycyrrhizin high producing strain	64.871

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.591
SRR2868004	Drought Stress (root)	27.648
SRR2967015	Control (root)	27.636

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	90.883
SRR9715740	Leaf	85.671
SRR9715741	Leaf	109.990
SRR9715739	Root	3.076
SRR9715742	Root	27.438
SRR9715743	Root	24.571

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.706
SRR8749028	MeJA induced 9h	0.773
SRR8749029	MeJA induced 9h	0.898
SRR8749030	Uninduced	0.061
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.157

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.391
SRR8400027	Control - Root	20.910