Gene detail information of Glyur004527s00043258 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G06620.1 | 2.00E-41 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| NR | XP_003609637.1 | 1.28E-75 | 1-aminocyclopropane-1-carboxylate oxidase-like protein [Medicago truncatula] |
| Swissprot | tr|Q84MB3|ACCH1_ARATH | 7.00E-46 | 1-aminocyclopropane-1-carboxylate oxidase homolog 1 |
| trEMBL | tr|G7JKB4|G7JKB4_MEDTR | 5.00E-76 | 2OG-Fe(II) oxygenase family oxidoreductase {ECO:0000313|EMBL:AES91834.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04527 | 1618 | 14216 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004527s00043258.1 | PF14226.1 | DIOX_N | 245 | 351 | 2.50E-18 |
| Glyur004527s00043258.1 | PF14226.1 | DIOX_N | 477 | 581 | 3.30E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.436 |
| SRR1783600 | control | 0.395 |
| SRR1783602 | moderate drought stress | 0.439 |
| SRR1811619 | moderate drought stress | 0.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.052 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.009 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.840 |
| SRR2868004 | Drought Stress (root) | 21.962 |
| SRR2967015 | Control (root) | 29.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.018 |
| SRR9715740 | Leaf | 3.458 |
| SRR9715741 | Leaf | 14.827 |
| SRR9715739 | Root | 0.447 |
| SRR9715742 | Root | 0.866 |
| SRR9715743 | Root | 0.834 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.072 |
| SRR8749028 | MeJA induced 9h | 6.140 |
| SRR8749029 | MeJA induced 9h | 2.203 |
| SRR8749030 | Uninduced | 30.716 |
| SRR8749031 | Uninduced | 56.997 |
| SRR8749032 | Uninduced | 27.965 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.185 |
| SRR8400027 | Control - Root | 3.854 |