Gene detail

Gene detail information of Glyur004520s00047601

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G01710.1	methyltransferases
NR	XP_007134628.1	hypothetical protein PHAVU_010G062900g [Phaseolus vulgaris]
trEMBL	tr\|V7ALZ9\|V7ALZ9_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW06622.1}

Sequence

Transcript Sequence

>Glyur004520s00047601.1
ATGGAGCCTGCCGCAGGCAAGCCTGGCTTTCTCAGGAACGTTCTGGTACGGTTACTTCTCTTCGGCGTTTTCATCGTCATCGTTCGGTTCGCTTACGTCATCACCATCGCCGGCGAGTCCTGCAACGTCGGCAACTTCTGCTTCTTCTCTCTGCCGGAAAATCTCAACGTGGCAATCGCCGGAGCCGGCACCGGCGCTCTCGCCGCCCGTTCCTCCGTCGCTGGTGCTTCGCCGGAGCTCTACGCTACTAGGGACTGGATCAACGGCGTCCGTTTCTATTCCTCCGTGTTCCAGGACCTGGTCGCCGGTGGCTACCTCTCGCCGGAATCGAAGTCTCTCTGCGTNGAAACGCCAACCGGCCGCGACGTCTTCGCGCTCCGGGAGATCGGCGTCGCGGATTCCGTCGGGATCTATAAGAAGGCTTCGAAGCCGCTGGTGAAATCCGGCGAAGCTCGCCGGATTCCNTTCGGAGACAAGACCTTCGACTTCGTATTCTCCGGCGACGGCGGTCTCGAGAGATCAGCGTCGCCGTCGGAATTCGCCGCCGAGATCGCACGGACGCTCAAACCCGAAGGGTTCGCCGCGTTCCATGTAAAGGCTAAAGACTCTTACAGTTTCAATTCATTCGTTGATTTATTCAAATTTTGTTGCAAAGTAGTGAAATTCAATGACATTGAAGGTTTCGATTCATCGATGCCTAACGTGAGAGAATTCATTGTGAAGAAAGAAGGTTATTATGGAATTGGTGATTCTGATTCCAATACAAAGTGCTCTTCTGTTCCAGGGTATAAACTTGAGTTGGTTAAGAATGCTGAATCTCTGATTGAAGAGGAACCACTGAAGCCATGGATCACACTCAAGAAGAATGTGAAGAACATAAAGTACCTTCCTTCAATGGTTGATATAAGTTTTAAGAATAGGTATGTGTATGTGGATGTTGGGGCTAGAAGCTATGGGTCTAGTATTGGAAGCTGGTTTAGGAAACAGTATCCAAAACAGAACAAGACCTTTCATGTGTATGCAATTGAAGCTGATAAAAGGTTCCATGAAGAGTATGGTTTGAAAAAAAAGGGGATAACCTTGTTGCCTTATGCTGCATGGGTGAGGAATGAGACCTTAGTGTTTGAAATCAACGGTGACCCGGGGGAGAAAAATCCGGTTAAAGGGAAAGGGATGGGAAGGATTCAGCCATTGCAGTCAACTAGGGGGGATGAGGTAGTTGAGAAGATACAAGGGTTTGATTTTGNTGATTGGTTGAAGAACACGGTTTCGAAGAATGATTTTGTTGTAATGAAAATGGATGTGGAAGGTACNGAGTTTGATTTGATTCCAAGGTTGTTTGAAACTGGGGCTATCTGTTTGATTGATGAGATTTTCCTTGANTGTCATTACAACAGATGGCAGAGGTGTTGCCCAGGGCAGAGGAGTCCTAAGTATGAGAAAACATATGAACAATGCTTGGAGCTTTTCACTTCTCTCAGACAAAGTGGAGTTCTTGTTCATCAATGGTGGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04520	9892	11406	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004520s00047601.1	PF08241.7	Methyltransf_11	145	195	6.90E-07
Glyur004520s00047601.1	PF05050.7	Methyltransf_21	312	455	9.40E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.141
SRR1783600	control	5.196
SRR1783602	moderate drought stress	2.028
SRR1811619	moderate drought stress	2.115

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.712
DRR006520	Root Summer glycyrrhizin high producing strain	9.747
DRR006521	Root Winter glycyrrhizin high producing strain	1.290
DRR006522	Root Winter glycyrrhizin high producing strain	1.207
DRR006523	Root Summer glycyrrhizin low producing strain	29.843
DRR006524	Root Summer glycyrrhizin low producing strain	29.812
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.389
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.592

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.978
SRR2868004	Drought Stress (root)	29.233
SRR2967015	Control (root)	30.015

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	108.666
SRR9715740	Leaf	62.824
SRR9715741	Leaf	80.663
SRR9715739	Root	23.715
SRR9715742	Root	38.713
SRR9715743	Root	29.036

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	207.174
SRR8749028	MeJA induced 9h	204.917
SRR8749029	MeJA induced 9h	302.219
SRR8749030	Uninduced	251.720
SRR8749031	Uninduced	316.802
SRR8749032	Uninduced	270.446

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.114
SRR8400027	Control - Root	37.424