Gene detail information of Glyur004508s00040123 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54290.1 | 2.00E-23 | cytochrome c biogenesis protein family |
| NR | XP_007133142.1 | 1.08E-40 | hypothetical protein PHAVU_011G155100g [Phaseolus vulgaris] |
| COG | YP_007133178.1 | 2.00E-18 | cytochrome c biogenesis protein transmembrane region [Stanieria cyanosphaera PCC 7437] |
| Swissprot | tr|Q2QY07|CCDA2_ORYSJ | 3.00E-38 | Cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (Precursor) |
| trEMBL | tr|V7ALY6|V7ALY6_PHAVU | 4.00E-41 | Uncharacterized protein {ECO:0000313|EMBL:ESW05136.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04508 | 13666 | 14493 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004508s00040123.1 | PF02683.10 | DsbD | 8 | 64 | 5.40E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 36.944 |
| SRR1783600 | control | 40.062 |
| SRR1783602 | moderate drought stress | 36.209 |
| SRR1811619 | moderate drought stress | 32.280 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.120 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.422 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.888 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.843 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.625 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.685 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 56.344 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 52.257 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.704 |
| SRR2868004 | Drought Stress (root) | 21.314 |
| SRR2967015 | Control (root) | 20.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 27.663 |
| SRR9715740 | Leaf | 45.598 |
| SRR9715741 | Leaf | 30.062 |
| SRR9715739 | Root | 11.635 |
| SRR9715742 | Root | 11.362 |
| SRR9715743 | Root | 9.401 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.248 |
| SRR8749028 | MeJA induced 9h | 14.838 |
| SRR8749029 | MeJA induced 9h | 14.246 |
| SRR8749030 | Uninduced | 27.497 |
| SRR8749031 | Uninduced | 11.407 |
| SRR8749032 | Uninduced | 13.215 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.374 |
| SRR8400027 | Control - Root | 20.549 |