Gene detail information of Glyur004502s00044222.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80570.3 | 4.00E-140 | RNI-like superfamily protein |
| NR | XP_004486627.1 | 0 | PREDICTED: F-box/LRR-repeat protein 14-like [Cicer arietinum] |
| COG | YP_008927.1 | 4.00E-07 | hypothetical protein pc1928 [Candidatus Protochlamydia amoebophila UWE25] |
| Swissprot | tr|Q3EC97|FBL14_ARATH | 0 | F-box/LRR-repeat protein 14 |
| trEMBL | tr|I1MCC2|I1MCC2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G00720.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04502 | 8677 | 12008 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.655 |
| SRR1783600 | control | 1.706 |
| SRR1783602 | moderate drought stress | 2.192 |
| SRR1811619 | moderate drought stress | 2.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.048 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.681 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.358 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.089 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.760 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.903 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.703 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.378 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.476 |
| SRR2868004 | Drought Stress (root) | 2.531 |
| SRR2967015 | Control (root) | 2.215 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.318 |
| SRR9715740 | Leaf | 2.640 |
| SRR9715741 | Leaf | 1.336 |
| SRR9715739 | Root | 2.236 |
| SRR9715742 | Root | 1.593 |
| SRR9715743 | Root | 1.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.922 |
| SRR8749028 | MeJA induced 9h | 2.472 |
| SRR8749029 | MeJA induced 9h | 1.426 |
| SRR8749030 | Uninduced | 0.799 |
| SRR8749031 | Uninduced | 2.227 |
| SRR8749032 | Uninduced | 1.969 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.158 |
| SRR8400027 | Control - Root | 4.753 |