Gene detail information of Glyur004484s00042467 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16990.1 | 3.00E-27 | disease resistance protein (TIR-NBS class), putative |
| NR | XP_003627638.1 | 7.90E-60 | Tir-nbs-lrr resistance protein [Medicago truncatula] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 1.00E-31 | TMV resistance protein N |
| trEMBL | tr|G7LCP7|G7LCP7_MEDTR | 3.00E-60 | Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313|EMBL:AET02114.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04484 | 13805 | 14650 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004484s00042467.1 | PF01582.15 | TIR | 2 | 119 | 6.70E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.936 |
| SRR1811619 | moderate drought stress | 1.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.798 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.208 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.061 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.946 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.534 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.628 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.522 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.595 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.055 |
| SRR2868004 | Drought Stress (root) | 12.074 |
| SRR2967015 | Control (root) | 3.143 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.145 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.599 |
| SRR8400027 | Control - Root | 0.150 |