Gene detail information of Glyur004484s00042466 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G44400.2 | 1.00E-11 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | KEH18372.1 | 5.85E-95 | TIR-NBS-LRR class disease resistance protein [Medicago truncatula] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 5.00E-14 | TMV resistance protein N |
| trEMBL | tr|A0A072TLW5|A0A072TLW5_MEDTR | 2.00E-95 | TIR-NBS-LRR class disease resistance protein {ECO:0000313|EMBL:KEH18372.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04484 | 314 | 13323 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004484s00042466.1 | PF00931.17 | NB-ARC | 83 | 157 | 9.50E-08 |
| Glyur004484s00042466.2 | PF00931.17 | NB-ARC | 39 | 113 | 8.40E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.210 |
| SRR1783600 | control | 0.190 |
| SRR1783602 | moderate drought stress | 1.335 |
| SRR1811619 | moderate drought stress | 1.396 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.712 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.076 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.075 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.826 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 31.270 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.169 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.631 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.733 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.247 |
| SRR2868004 | Drought Stress (root) | 9.799 |
| SRR2967015 | Control (root) | 2.497 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.005 |
| SRR9715740 | Leaf | 0.010 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.167 |
| SRR8749028 | MeJA induced 9h | 0.013 |
| SRR8749029 | MeJA induced 9h | 0.055 |
| SRR8749030 | Uninduced | 0.075 |
| SRR8749031 | Uninduced | 0.015 |
| SRR8749032 | Uninduced | 0.005 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.361 |
| SRR8400027 | Control - Root | 0.157 |