Gene detail

Gene detail information of Glyur004447s00044209

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G04865.1	2.00E-21	Aminotransferase-like, plant mobile domain family protein
NR	XP_007134707.1	0	hypothetical protein PHAVU_010G069700g [Phaseolus vulgaris]
Swissprot	tr\|Q9LNG5\|PPP7L_ARATH	6.00E-18	Serine/threonine-protein phosphatase 7 long form homolog
trEMBL	tr\|V7AR69\|V7AR69_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW06701.1}

Sequence

Transcript Sequence

>Glyur004447s00044209.1
TACACGTCATCATCATCCAATTTGAAGCTTCTCCCGGAAGTTTTGCCAGTACTAGCACCAGCATCAACTCTGTCTTCGGGAAGAGCAACTCCATTCGTCCATTCATACCATACCACGCTTCTCTCCTCCGTCGCCGGCGCCGGAAAACCCATATTCCCGATGAGAAAATCCACCAGACTTTCTTCCATCGGCCTCACCCAAGTTCCAGAACCGGTGAGGAGCTTCCGTACTCGTTTTTCTCTAACATCATTCACGAAGCGCGTTCAGAGCCTCACCACGGAGCAAAGATCCGCAATATCCCAAACGGGGTTCGGTGGCTTACTAGCTATTCCCAACCATTCCCTCAACAAGGTCTTCCTTGCCGAGCTCATGGAAGCATGGGATTGCGAGCGTCGAGCTTTTACGGTGGCGGGGAAACGCGTGGAGATGAGTTTGTTGGACGTTGTTCTGATTCTGGGTCTCCCGGTTGTGGGGAAGCGCGTGGNGTTCACGGAGGAGGAACCGTTCTCCGAATTAGAGGAATTTTATGGGGCGGCGCGTGGGAAGAGGAAGGTGGCGATGAGTTCTCTTGAGGCCAGGCTCGATTCACTTGGGGAAGTTGTGGATGATGATTTTGTGAGGACCTTCTTGCTTTACACAATTGGGACTTTCCTCTCTTCCAATGATGGGAAAGTCGATTCCAGGTACTTGTCGTTTCTTGTGGATTTGGATGAGGCTTCTCGGTTCGCTTGGGGTGCTGCTGTTGTTGAAGATTTGTGTCTGTGGCTGGATAAGAGGAAACAAAACAATGTTCAGTATGTTGGTGGTTGTCTTATATTTCTCCAAACATGGTCCTATGAGCATTTTGAGATAGCACGGCCACACTTGCAAGATCATGATTTGACCTTTCCTCGTGTGTGTCGATGGGATCATAGTAAATCTCACCAAAGGCAACGGGGTACTTCAAGGTTTAAGGACCTGCAAGATGACCAGGTGATTTGGAAACTCCAACCTACTTCTGAAGAGTTACAAATAGAGATAATAAAAGAAGCACTGGAGTTGCTGGGTGACAACAAAGAGGTTCAGGTTCCTGGTGTGGAATCAGATTTACAGCTTAGCATCTCTAGTAAAGTACATAGAGAGGACGAGGTTAATTTTGAGAATGAGGTAGTGGAGGACACTCCCACAAGGATTAGCATCTGTGATGGAGAGAAGGAAATCAATCTTGAAAACCTGATAGTTGAGGAGACTCCCCCAAATTCGAGCATTTGTGACAAAGTAGAGCAGGAGATGAATCGTGAAGATGATGAGTTCCATGCTGAAAAGCTCATAGTGGAGGAGGACAACCCCACAAGTTTGNGCATGCAAGAATTGAATGCTGAAAGTGAAAAACTCATAGTGGAGGACACTCCCCCAAAATTGAGCTTTTATGATGATGATCTAAGGAAGAAAAATACCATGTTAGAAGAGGAAAATACTGAATTGAAGATGAAATTTGGCCAACTAATGGAAGAAAATGGGCTTCTCCGTAAGCAGATTATGTCAAGTACCCAACTTGAAGAGCAGAACAATGAGTTGAAGCGAGAGCTGGACTTATTGAGAGAACAAAATAGAATTTTAAACCTGTCAATAAGTAGCTTTGTGGCCCAAATGGATAAACATGTTTTGGATTTCGAAACTAACATGCTATCCTAGAATTATACTCTAAAACTTACATAGTTGCTTAGAGGAAGAGTCTGTGCTGTGGCGCTTAAACCACCCAATACATGCTGACTTTAGGCAGCATACTGTATATATTTATTGTTAAGGTAAATAGACATTATTTATTTGTGGGTTGTGTTAGGAGGTTTCTTTTTAAGTGAAACCATGAAATTCATGCCAGGTAAACACAACTGGTTTTACCTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04447	215	4326	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004447s00044209.1	PF10536.4	PMD	103	337	4.00E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.965
SRR1783600	control	1.004
SRR1783602	moderate drought stress	0.661
SRR1811619	moderate drought stress	0.638

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.795
DRR006520	Root Summer glycyrrhizin high producing strain	0.837
DRR006521	Root Winter glycyrrhizin high producing strain	0.474
DRR006522	Root Winter glycyrrhizin high producing strain	0.482
DRR006523	Root Summer glycyrrhizin low producing strain	1.386
DRR006524	Root Summer glycyrrhizin low producing strain	1.504
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.575
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.610

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.322
SRR2868004	Drought Stress (root)	1.027
SRR2967015	Control (root)	1.451

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.739
SRR9715740	Leaf	1.236
SRR9715741	Leaf	0.685
SRR9715739	Root	0.386
SRR9715742	Root	0.570
SRR9715743	Root	0.627

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.055
SRR8749028	MeJA induced 9h	4.823
SRR8749029	MeJA induced 9h	6.232
SRR8749030	Uninduced	0.990
SRR8749031	Uninduced	1.154
SRR8749032	Uninduced	0.902

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.551
SRR8400027	Control - Root	1.051