Gene detail information of Glyur004432s00042487


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G26630.13.00E-14Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein
NRXP_010938815.11.65E-15PREDICTED: eukaryotic translation initiation factor 5A [Elaeis guineensis]
Swissprottr|Q93VP3|IF5A2_ARATH8.00E-17Eukaryotic translation initiation factor 5A-2
trEMBLtr|I1KCW5|I1KCW5_SOYBN7.00E-16Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G21290.2}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold0443216808761+


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
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Gene Ontology

biological_process

GO:0045901  positive regulation of translational elongation

GO:0045905  positive regulation of translational termination


molecular_function

GO:0003723  RNA binding

GO:0003746  translation elongation factor activity

GO:0016772  transferase activity, transferring phosphorus-containing groups

GO:0043022  ribosome binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
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Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.915
SRR1783600control0.882
SRR1783602moderate drought stress2.493
SRR1811619moderate drought stress2.631

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.964
DRR006520Root Summer glycyrrhizin high producing strain1.867
DRR006521Root Winter glycyrrhizin high producing strain0.801
DRR006522Root Winter glycyrrhizin high producing strain0.885
DRR006523Root Summer glycyrrhizin low producing strain1.822
DRR006524Root Summer glycyrrhizin low producing strain2.023
DRR006525Leaf Summer glycyrrhizin high producing strain2.286
DRR006526Leaf Summer glycyrrhizin high producing strain1.458

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)1.956
SRR2868004Drought Stress (root)1.961
SRR2967015Control (root)2.580

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf0.832
SRR9715740Leaf0.278
SRR9715741Leaf0.463
SRR9715739Root0.179
SRR9715742Root0.487
SRR9715743Root0.750

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.129
SRR8749028MeJA induced 9h8.391
SRR8749029MeJA induced 9h3.235
SRR8749030Uninduced5.784
SRR8749031Uninduced7.945
SRR8749032Uninduced2.345

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root1.851
SRR8400027Control - Root1.720