Gene detail

Gene detail information of Glyur004422s00040310

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30970.2	3.00E-154	aspartate aminotransferase 1
NR	XP_007134682.1	0	hypothetical protein PHAVU_010G067200g [Phaseolus vulgaris]
COG	YP_001343275.1	6.00E-93	aromatic amino acid aminotransferase [Marinomonas sp. MWYL1]
Swissprot	tr\|P46643\|AAT1_ARATH	0	Aspartate aminotransferase, mitochondrial (Precursor)
trEMBL	tr\|V7AR51\|V7AR51_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW06676.1}

Sequence

Transcript Sequence

>Glyur004422s00040310.1
CTTTTTTTTTTTCTTCTTATATAAACCATTGAGAAACATTCAACTTGCTTCAACCCAACGAATTAGCTGCAGCTCAGGATTATTATCATGTGGAAGTGCATCAATGGAAGAATTACCAGAAGATTTTCATCCACTTGTGTGAGTACACGTGGCTGGTGGGACCATGTGATACCAGCACCAAAAGACCCCATTGTGAGTGTGACTGAGGCCTTTCTTGCTGACCCTTTCCCTCACAAGATCAATCTTGGAATGGGAACTTACAGGGATGATGATGGCAAACCCTTCATTCTCCAATGTGTTCGTGATGCAGAATCAAAGATTGAGATATGTAAATTCATGGAGTCAAACTCTTCTTCAGTCAGTTTAAAATTTGTTCAGGAGAGTGTAAGGTTGGCATATGGGAATGATTCATATGTTGTCAGAGAAGGACTGTTTGCTGGAGTTCCAACTCTGTCCGGAACTGGTGGATGCCGGGTTTTCGCTGAACTTCAGAGGCGTTTTTATCCTGATTCTCAAATTTATCTACCAGATCCTACTTGGTCAAATCACCACAACATATGGAGACAGGCTGAAATTCCAGTCAGAACATTCCACTACTACCACCCAGATACTAAGGGTTTAGATTTTGCTGCACTCATAAATGATATCAAGAATGCACCAGATTGTTCTTTCTTCTTGTTTCATCCATGCGCCCACAACCCAACTGGTGTTGACCCCACTGAGGAACAATGGAGAGAGATATCATACCATCTCAAGGTAAAAAATCATTTCCCCTTCTTTGACATGGCTTATCAAGGTTTCTCAAGTGGGGATCTTGACAAAGATGCCGTGGCACTTCGGATTTTCCTTGAAGATGGGCATTTGATAGGTTGTGCTCAATCATTTGCAAAGAACATGGGATTGTTTGAGCATAAAGTTGGTTGTCTTAGTGTTTTGTGCCACAATGTAAAACAAGCAGCTGCAATGAAAGGCCAACTGCAGCAGATTTCCCATGCAATGTATAGCAGCATTCCTTTTCATGGTATTTTACTAGCTACTTGGATATTAAGCAACCCAGATTGGGACGCTCTCTGGAGGAAAGAGATTAAGGGTATGGCTAAACGAATTCAAACAATGCGAACTACTCTGCGACGTTGTCTTGAGAACTTGGATTCATCTTACAATTGGGAACATATAACATCCCAGGTTGGCATGTTCTCCTTTTCTGGATTAACCCCTGATCAGGTTAAATGCCTGGAGAAGCTGTTTCATATATACATGACCCCTGATGGAAGNATAAGCATGGCAGGTGTGACCACAAGCAATGTGAATTATTTAGCAGATGCAATACATCAGGTGACCAGAATCAANGAGGAAGCCTTAAGTTCATCTAATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04422	2349	6290	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14455	GOT2	EC:2.6.1.1	Carbon metabolism	map01200
			2-Oxocarboxylic acid metabolism	map01210
			Biosynthesis of amino acids	map01230
			Carbon fixation in photosynthetic organisms	map00710
			Alanine, aspartate and glutamate metabolism	map00250
			Cysteine and methionine metabolism	map00270
			Arginine biosynthesis	map00220
			Arginine and proline metabolism	map00330
			Tyrosine metabolism	map00350
			Phenylalanine metabolism	map00360
			Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
			Isoquinoline alkaloid biosynthesis	map00950
			Tropane, piperidine and pyridine alkaloid biosynthesis	map00960
			Fat digestion and absorption	map04975

Gene Ontology

biological_process

GO:0006520 cellular amino acid metabolic process

GO:0009058 biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0008483 transaminase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004422s00040310.1	PF00155.16	Aminotran_1_2	49	414	5.00E-67

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.947
SRR1783600	control	3.010
SRR1783602	moderate drought stress	3.100
SRR1811619	moderate drought stress	3.034

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.287
DRR006520	Root Summer glycyrrhizin high producing strain	3.622
DRR006521	Root Winter glycyrrhizin high producing strain	66.931
DRR006522	Root Winter glycyrrhizin high producing strain	63.802
DRR006523	Root Summer glycyrrhizin low producing strain	18.918
DRR006524	Root Summer glycyrrhizin low producing strain	18.520
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.403
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.404

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.777
SRR2868004	Drought Stress (root)	2.582
SRR2967015	Control (root)	1.918

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.632
SRR9715740	Leaf	0.586
SRR9715741	Leaf	0.162
SRR9715739	Root	0.927
SRR9715742	Root	1.609
SRR9715743	Root	1.305

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	110.830
SRR8749028	MeJA induced 9h	362.980
SRR8749029	MeJA induced 9h	215.818
SRR8749030	Uninduced	189.004
SRR8749031	Uninduced	143.653
SRR8749032	Uninduced	88.949

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.661
SRR8400027	Control - Root	14.342