Gene detail

Gene detail information of Glyur004404s00039383

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G02600.1	4.00E-105	lipid phosphate phosphatase 3
NR	XP_003624389.1	0	Lipid phosphate phosphatase [Medicago truncatula]
Swissprot	tr\|Q8LFD1\|LPP3_ARATH	3.00E-153	Putative lipid phosphate phosphatase 3, chloroplastic (Precursor)
trEMBL	tr\|G7KV76\|G7KV76_MEDTR	0	Lipid phosphate phosphatase-like protein {ECO:0000313\|EMBL:AES80607.2}

Sequence

Transcript Sequence

>Glyur004404s00039383.1
GTCTTGCGACTTGCGAGAACTCTAAGATGCAAAACCAGAACAGATAATATCCATGATTTATCTATCAGGAGGCTGTGGATCTCTGCTGTGACTGGTGCTCAATTTTCATCCATTAATTTTCCATTGATAGACACGGAAAATGAAGAGGATTTCAGAACAAGGGAAGTCCAGCTGGGTTCACACACCATGAGTTCTCATGGATACGCAATTGCTAGAATCCACAGGCATGATTGGGTCATACTATTGCTCCTTGTGTTAATTGAAATCATCCTATACATTATCCACCCTTTCTATCGCTTCGTTGGGAAGGATATGATGACTGATCTCAGATATCCCCTGAAAAGTAATACAGTTCCTGTTTGGGCTGTTCCTATGTATGCAGTTTTATTGCCTATGGTGATCTTTGTTGTTGTCTATATCCGAAGGAGAGATGTCTATGATCTTCATCACGCCATACTGGCGGTAATTACCGATGCGATAAAAGATGCAGTAGGTCGACCAAGACCAGACTTCTTCTGGCGATGTTTTCCAGATGGAAAGGATGTTTATGACAAATTGGGAAATGTCATTTGTCATGGTGACAAGGATGTCATAAAGGAAGGACATAAGAGGTCATTTGCTGGTCTGGGTTTTTTATCACTGTACTTATCTGGAAAAATAAAAGTATTTGATCGCCGAGGTCATGTTGCGAAACTTTGCATTGTTTTTCTACCACTACTTTTTGCATCACTTGTTGGCATTTCTCGAGTTGATGACTACTGGCATCACTGGCAGGACGTGTTTGCTGGAGGACTTTTAGGGCTTACAGTGGCTACTTTTTGCTATTTGCAGTTTTTTCCTCCTCCTTATCATCCTGAAGGTTGGGGTCCTTATGCTTATTTTAGGATGTTAGAAGAATCACGAGGTATGGCACAAGCTCCAAATGCTCAAAATGCTAGTCAAGCACAATTAACAGAAGCTCAGGTTGAGAACCAGGAAGGACAAAGTCACCATGGGTGCATGGGGTTATCTTTATCACGGAATCAAAATCAAAGTCCAACATTAAATGAAATTGAATCTGGAATGAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04404	9160	13136	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004404s00039383.1	PF01569.16	PAP2	153	279	1.80E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.475
SRR1783600	control	4.342
SRR1783602	moderate drought stress	4.883
SRR1811619	moderate drought stress	4.861

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.887
DRR006520	Root Summer glycyrrhizin high producing strain	4.543
DRR006521	Root Winter glycyrrhizin high producing strain	9.586
DRR006522	Root Winter glycyrrhizin high producing strain	11.376
DRR006523	Root Summer glycyrrhizin low producing strain	8.233
DRR006524	Root Summer glycyrrhizin low producing strain	8.152
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.918
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.122

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.084
SRR2868004	Drought Stress (root)	4.695
SRR2967015	Control (root)	5.439

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.842
SRR9715740	Leaf	3.559
SRR9715741	Leaf	2.883
SRR9715739	Root	2.576
SRR9715742	Root	2.459
SRR9715743	Root	2.430

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.282
SRR8749028	MeJA induced 9h	0.545
SRR8749029	MeJA induced 9h	1.256
SRR8749030	Uninduced	1.376
SRR8749031	Uninduced	1.349
SRR8749032	Uninduced	1.785

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.524
SRR8400027	Control - Root	5.353