Gene detail

Gene detail information of Glyur004402s00039609

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06900.1	1.00E-46	cytochrome P450, family 93, subfamily D, polypeptide 1
NR	BAA74466.1	2.66E-175	cytochrome P450 [Glycyrrhiza echinata]
Swissprot	tr\|P93149\|C93B1_GLYEC	3.00E-177	Licodione synthase
trEMBL	tr\|Q9MBE8\|Q9MBE8_GLYEC	1.00E-175	Cytochrome P450 {ECO:0000313\|EMBL:BAA74466.1}

Sequence

Transcript Sequence

>Glyur004402s00039609.1
CACGTGATGCGCATGTGTAGCCTAAAATAAGTACCAAGTAACGAGTCCCCAAGTAGCAAACCTCTGTCTCTGTCATAACTAGCTATTCCGTCTGATTCACCGGTGAAAAAAACCAAGCAAGAGAAAATGGAATCTCAACTCATGGCGGTGTCTGTAGTGTTGGTTTCAGCACTTATTTGCTACTTCCTTTTCCGGCCATATTTTCACCGCCACGGAAAAAACCTCCCACCATCTCCTCTGTTTCGGCTTCCAATAATTGGGCACATGCACATGTTGGGTCCCCTTCTCCACCAGTCCCTTCACAATCTCTCTCACCGTTACGGTCCTCTGTTTTCTCTTAACTTTGGCTCTGTTCTCTGTGTCGTTGCTTCCTCCCCTCACTTCGCCAAACAACTCCTTCAAACCAACGAACTTGCATTTAGCAGTCGCATTGAAACCACCGCCGTTAAACGCCTCACTTACGAATCCTCATTGGCCTTCGCNCCCTGTGGTGATTATTGGAGGTTCATCAAGAAGCTTAGCATGAACGAGTTCTTGGGCTCACGTGGCATGAACAACTTCCTGCACGTGCGTGCACACGAGACTCATCGGTTGTTACGGCTTTTGTCCAACAGGGCAAAAACGTGTGAGGCCGTTAATCTCACCGAGGAACTGCTTAGGTTGACCAATANCGTTATTTCTAGGATGATGTTGGGGGAGGCAGAGGAGGCCAGAGATGTAGTGCGTGGTGTGAGCCAGATATTCGGAGAGTTTAATGTCTCGGATTTCATTTGGTTGTTTAAGAAGATGGATTTGCAGGGGTTTGGGAAGAGGATAGAGGATTTGTTTCTGAGGTTCGATACGTTGGTGGAGAGGATTGTGTGCAAACGGGTGCAGATGAGGAAAGAGAAACGAATGGGAAATGGAGGGAGTGGCAAGCAGCAGGGTACTGATGAGGTCAAAGATTTTCTTGATCTTTTGCTTGATTGCGCTGAGGATGAGAACTGCGAGGTGAAGATTCGAAAGACTCAAATTAAGGCCTTGATTATGAGTGATGTTTATGCTGCTTCAAGTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04402	13522	14662	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP712A1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004402s00039609.1	PF00067.17	p450	34	302	3.70E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	96.797
SRR1783600	control	96.995
SRR1783602	moderate drought stress	46.840
SRR1811619	moderate drought stress	46.327

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.464
DRR006520	Root Summer glycyrrhizin high producing strain	10.177
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	3.231
DRR006524	Root Summer glycyrrhizin low producing strain	3.454
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.351
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.522

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.733
SRR2868004	Drought Stress (root)	10.502
SRR2967015	Control (root)	11.907

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.186
SRR9715740	Leaf	0.024
SRR9715741	Leaf	0.000
SRR9715739	Root	95.232
SRR9715742	Root	41.560
SRR9715743	Root	55.427

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.269
SRR8749028	MeJA induced 9h	0.571
SRR8749029	MeJA induced 9h	0.778
SRR8749030	Uninduced	0.060
SRR8749031	Uninduced	0.072
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	88.691
SRR8400027	Control - Root	92.101