Gene detail information of Glyur004390s00040490 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G47490.1 | 2.00E-128 | RNA-binding protein 47C |
| NR | XP_007160823.1 | 0 | hypothetical protein PHAVU_001G019600g [Phaseolus vulgaris] |
| COG | NP_967340.1 | 3.00E-12 | RNA-binding protein [Bdellovibrio bacteriovorus HD100] |
| Swissprot | tr|Q9SX79|RB47C_ARATH | 8.00E-178 | Polyadenylate-binding protein RBP47C |
| trEMBL | tr|V7CRK3|V7CRK3_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW32817.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04390 | 53 | 6571 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004390s00040490.1 | PF00076.17 | RRM_1 | 97 | 163 | 1.60E-12 |
| Glyur004390s00040490.1 | PF00076.17 | RRM_1 | 190 | 260 | 3.90E-12 |
| Glyur004390s00040490.1 | PF00076.17 | RRM_1 | 295 | 358 | 3.00E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.012 |
| SRR1783600 | control | 8.190 |
| SRR1783602 | moderate drought stress | 8.355 |
| SRR1811619 | moderate drought stress | 8.215 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.686 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.135 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.086 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.506 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.445 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.275 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.565 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.667 |
| SRR2868004 | Drought Stress (root) | 6.907 |
| SRR2967015 | Control (root) | 7.804 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.889 |
| SRR9715740 | Leaf | 3.677 |
| SRR9715741 | Leaf | 8.796 |
| SRR9715739 | Root | 2.757 |
| SRR9715742 | Root | 4.384 |
| SRR9715743 | Root | 4.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.324 |
| SRR8749028 | MeJA induced 9h | 22.911 |
| SRR8749029 | MeJA induced 9h | 25.418 |
| SRR8749030 | Uninduced | 8.202 |
| SRR8749031 | Uninduced | 12.649 |
| SRR8749032 | Uninduced | 21.814 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.050 |
| SRR8400027 | Control - Root | 6.458 |