Gene detail

Gene detail information of Glyur004380s00042440

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01900.1	2.00E-148	DNAse I-like superfamily protein
NR	KHN28883.1	0	Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Glycine soja]
Swissprot	tr\|Q9LR47\|IP5P3_ARATH	3.00E-82	Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2
trEMBL	tr\|I1KRQ5\|I1KRQ5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G09870.1}

Sequence

Transcript Sequence

>Glyur004380s00042440.1
ATGTGGCCTACATTAGTGGCTAATAAGATACTCAGGAAGCGATTGGGAAGCAGCAACTTTGTAGCAGATTATCCTAGTTATGAACAACCCTTGTTGGGTATTGCAGACATTGATCAGATTCAGAGCCCTAAAACAATTCTTAATGATCACAAGGACAAACACAAATACAAGATTTTTGTCAGTACATGGAACATAGGCGGGGTTGCACCGGATGAAGATTTGAATATGGATGATTTGTTGGAGACACACAATAACTCCTGTGACATCTATGTACTTGGGTTTCAAGAAATAGTGCCTCTGAAAGCATCCAACGTATTGGGATCTGAAAACAATGAGATTCCTACGAAATGGAATTCCATAATCAGGGAATCCTTGAACAGAGATAAAAAACAGGATCCAAAGAATATTTGTAAGAAAGAAAATCCAGCTAAGGATCAGTGTGGTGAAGCCCCACATGATTTCCAATGTATCATTAGCAAGCAAATGGTTGGAATATTCATATCTGTGTGGACAAGGAGAGATCTTCGTCCATTCATTCAGCATCCAAGTGTCTCATGTGTAGGCTGTGGCATAATGGGATGTTTAGGAAACAAGGGTTCTGTGTCAGTGAGGTTTCGGTTACATGAAACAAGCTTCTGCTTTGTGTGCAGCCATCTAGCTTCAGGGGGTCGAGAAAGGGATGAGAAGTATAGGAACTCCAATGTTGCTGAGATTTTTTCCCGGACTAGTTTTCCTAGAGGCCCTTTGCTTGATTTGCCAAAAACCATTCTAGATCATGATCATGTAGTATTGCTTGGAGATCTAAATTATAGGATTTCTCTGCCAGAAGAAACGACACGCTTACTTGTTGATAAAAGAGACTGGGATTCCTTATTAGAAAATGATCAGCTAATGATGGAGTTAATGAATGGGAACATATTAAAAGGATGGCATGAAGGAGCAATCAAATTCGCTCCTACCTACAAGTATTGTCCAAATTCAGACGTATACTATGGATGTTGTTATCAAGGGAAAAGGACAGAAAAGAGGCGAGCACCAGCATGGTGTGATCGAATAGTATGGTACGGCAAGGGATTAAAGCAACTTCAGTACACTAGGAGTGAATCAAAACTATCAGATCACAGGCCTGTTAAGGCAATTTTTACAGCAGAAGTGTGGGTTTTACTAGATCTCAAAACATTACAAAGCTTGTTTCTATCAGAAAGATTTGAGCAAATTAAAACTCCTTTTGAAGTTNCTACCACTGAGGAATTTGTATGTAGAAAACAATCAAGCTTCCGGTTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04380	8542	11370	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0046856 phosphatidylinositol dephosphorylation

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004380s00042440.1	PF03372.18	Exo_endo_phos	62	374	2.00E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.737
SRR1783600	control	0.728
SRR1783602	moderate drought stress	0.101
SRR1811619	moderate drought stress	0.070

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.166
DRR006524	Root Summer glycyrrhizin low producing strain	0.257
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.246
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.287

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.142
SRR2868004	Drought Stress (root)	46.933
SRR2967015	Control (root)	26.744

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.534
SRR9715740	Leaf	0.386
SRR9715741	Leaf	0.191
SRR9715739	Root	0.050
SRR9715742	Root	0.557
SRR9715743	Root	0.460

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.039
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.022
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.968
SRR8400027	Control - Root	6.936