Gene detail information of Glyur004373s00046027 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G14130.1 | 2.00E-87 | Peroxidase superfamily protein |
| NR | AFK39314.1 | 3.78E-155 | unknown [Lotus japonicus] |
| Swissprot | tr|Q96509|PER55_ARATH | 2.00E-107 | Peroxidase 55 (Precursor) |
| trEMBL | tr|I3SGC2|I3SGC2_LOTJA | 1.00E-155 | Uncharacterized protein {ECO:0000313|EMBL:AFK39314.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04373 | 1079 | 3695 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00430 | E1.11.1.7 | EC:1.11.1.7 | Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004373s00046027.1 | PF00141.18 | peroxidase | 38 | 254 | 6.50E-61 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 26.873 |
| SRR1783600 | control | 27.305 |
| SRR1783602 | moderate drought stress | 18.493 |
| SRR1811619 | moderate drought stress | 18.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.626 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.081 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.480 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.760 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.290 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.905 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 43.344 |
| SRR2868004 | Drought Stress (root) | 36.238 |
| SRR2967015 | Control (root) | 29.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.724 |
| SRR9715740 | Leaf | 11.218 |
| SRR9715741 | Leaf | 30.324 |
| SRR9715739 | Root | 27.302 |
| SRR9715742 | Root | 38.567 |
| SRR9715743 | Root | 37.486 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.221 |
| SRR8749028 | MeJA induced 9h | 39.730 |
| SRR8749029 | MeJA induced 9h | 34.527 |
| SRR8749030 | Uninduced | 177.201 |
| SRR8749031 | Uninduced | 65.053 |
| SRR8749032 | Uninduced | 25.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 40.812 |
| SRR8400027 | Control - Root | 50.259 |