Gene detail information of Glyur004372s00041125.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G43000.1 | 1.00E-49 | NAC domain containing protein 42 |
| NR | XP_006575646.1 | 1.42E-128 | PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X2 [Glycine max] |
| Swissprot | tr|Q9SK55|NAC42_ARATH | 1.00E-59 | Transcription factor JUNGBRUNNEN 1 |
| trEMBL | tr|K7KBB5|K7KBB5_SOYBN | 5.00E-129 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G45371.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04372 | 10242 | 12382 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NAC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004372s00041125.1 | PF02365.10 | NAM | 5 | 81 | 1.30E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.360 |
| SRR1783600 | control | 4.699 |
| SRR1783602 | moderate drought stress | 4.454 |
| SRR1811619 | moderate drought stress | 4.660 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.216 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.272 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.392 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.421 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.284 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.021 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.119 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.118 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.846 |
| SRR2868004 | Drought Stress (root) | 34.860 |
| SRR2967015 | Control (root) | 26.728 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.008 |
| SRR9715740 | Leaf | 5.178 |
| SRR9715741 | Leaf | 11.222 |
| SRR9715739 | Root | 0.691 |
| SRR9715742 | Root | 0.497 |
| SRR9715743 | Root | 1.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 77.399 |
| SRR8749028 | MeJA induced 9h | 59.512 |
| SRR8749029 | MeJA induced 9h | 98.585 |
| SRR8749030 | Uninduced | 45.558 |
| SRR8749031 | Uninduced | 148.545 |
| SRR8749032 | Uninduced | 94.383 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.373 |
| SRR8400027 | Control - Root | 16.971 |