Gene detail

Gene detail information of Glyur004372s00041123

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	1.00E-73	disease resistance protein (TIR-NBS-LRR class), putative
NR	KHN38342.1	0	TMV resistance protein N [Glycine soja]
COG	YP_001869729.1	2.00E-07	hypothetical protein Npun_R6524 [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q40392\|TMVRN_NICGU	1.00E-78	TMV resistance protein N
trEMBL	tr\|K7KBB2\|K7KBB2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G45353.1}

Sequence

Transcript Sequence

>Glyur004372s00041123.1
ATGGCAAAATTCACCTATGATGTTTTCCTCAGTTTTAGAGGTGAGGACACGCGGCACAATTTCATAGGATATCTTCGTAAAGAGTTGCAGCGGAAGGGAATCAACGCTTTCTTTGATGATCAAAATCTGAGGATAGGGGAAGGCATTTCCCCTGCTCTTTCCAAAGCCATTGAAGAATCTAATATCTCTGTCATTGTGTTCTCTAAGAACTATGCTTTTCTTGCCAATGTTAGAGAGAAATCAAACAAAAGCAATGGACCGGAAGATCTACAAAAGACTCTTCTATCAGAGATGTTGGAGGAGCCAGAAACCGAGTTGGGCAGTACAAGTAGTAGGATCATCGTAACAACAAGGGACAAAGATTTGCTCATTGGTCATCAAGTTCAAAAGATTTATGAAATGACTAAACTTAATGATCAACATTCTCTTGAGTTGTTTTGTCGGAATGCCTTCGAAAAGAGCCATCCTGAAACAGGTTATGAATATGTGACTTGTCGTGCAGTAGGTTATGCCAAGGGGCTTCCATTGGCTTTAAAGGTAATAGGCTCCGATTTTGCTACCCAAAATAGTTTAGATGCTTGGGAAGATGCATTGAAAGAATATGGGAGGAGTCCACCTAAAGGTATTCAAGACGTGCTCAAAATAAGCTACAATAGATTGGGGCACAATGCCAAGACTGTTTTCCTAGACATAGCTTGCTTCTTCAAATGGGAGAAAATAGAATATGTCAAGAAGATACTTGAGGAATTTGGTGCACCATCCAATATTAAAGAACTTGTTAACAAATCTCTCCTAACCGTTGAGTGTGGCTATTTGAAGATGCATGATCTGATACAAGATATGGGTAGAGAGATTGTTAGACAGGAGGCACGAAATCCAGGAAAACGTAGCAGATTATGGTTTTATGAAGATGTTCTTGAAGTATTGTCTGAAGACTCTGGAAGCGATGAAATTGAGGGGATAATGCTTGATCCTCCCCAACGAGAAGTAGTTGATTGGAGTGGTACTGCATTTGAGAAGATGAAATGGCTCAGAATTCTCATTGTTCGAAATACATCCTTTTCATCAGAGCCTAAACATCTGCCAAATCACTTAAGGCTGCTTGATTGGGTGGGGTATCCTTCAAAGTCTTTCCCACCAAAATTTCATCCGAAGAAAATCGTTGTCTTGAATTTGCCAAGAAGCCAACTTACAATGGAAAAACCATTTAAGAAACTTTCGTGTCTAACTGAGCTGAATTTCTCAAATAATCAATCCATCACTGCAATACCTGATGTGTCTGATGTTCAAAATTTGAGAGAACTGACACTTGCTTGTTGTCATAACCTAATTACGGTTCATGAATCTGTTGGGTTTCTCAAATATCTTGTCCACTTAAGCGCTCGTGATTGTTTCAAACTTCAAAATTTCCCGCAAAGAATGTTTTTACCATCTCTAGAATTCTTGAGCCTTAATTCGTGCAAAAAACTTGAACACTTCCCAGAGATAGTGAACAACATGAATAAGCCATTAATGGAGATTGATATGGGAGGTACCTCCATTGAGGAGCTGCCAGATTCCATTGCTAATCTTACTGGGCTTCATTCTATAGATATGTCACACAGCAAGAAACTCAAATATCTACCAAATAGCTTATTCATGCTACCAAATGCTTATTCCTTTTCCATTGGGGAATTATGTTCTCACCTTCAAGACTCCTTCATGAGGTTCCTAGAGAGTCGTTCAGTAGCCAATGGTCGTTCAGCATTAAAAACATTGTCTATCGAATACGATGGCTTGTCAGATGCAGACCTCCACATAATTCTCACATGTTTTCCAAAATTAGAAGAGTTGATTGCATCGGGGAACAATTTTGTCTCTCTCCCTGCGTGCATTAAAGACTCTGTTCACTTGACAAGTCTTGATGTGAGCAATTGCATGAACCTTCGAGAAATTCCTGAATGCACTAACTTGAGAGTTCTAGATGTCCGTCATTGTGTGAGGCTTGAACACATTTCAGAGTTTCCATCTACTATTCGGGAAGTAGATGCAAGATACTGCTCCTCCTTGAGTACAGAGACGACAGCCATGTTATGGCATCAGGTGAAAGAAGAGAGATGGGGATTCAACATTGTGATGCCCCATGAAACCGAGATTCCAGAATGGTTTGACTACAGCTGCGAAGGAGGGAATCCACATTTTTGGGCTCGCGGAAAGTTCCCCGTTGTTGCTCTAGCGTTGGTGTCCAACGATGTACCACCTCGAAGCCGCTACCTTTTTTGTGGGCTTAACTTAGTTATCAACGGTGAATTTGTTCCTCGCGAAGATCAGTTCCAAAAATTCAGAATTGCACCGTATCATGTCTTAGTTTGTGATCCACGAGCCTCGTTCAGGGAAGAGGTGTGGTTGGGCCTTGATGCGCTGCTTGTGCATGAGTGGAATCTAGTGCAGGTTTCATATGAAGTTGACCTCGGCATAACATCGCCGCTAACTTGTTGGGGAGTTTTTGGGTACAAACAAGAAACCAACATGGAAGATATCCAATTCATGTGCCCCGACCCAAAGTACTCTGATTCTGATATAGCCAGCACTAGCTATGGTGCCATTTACTATGGACCACCTGAAAACTTGTTCATCATGGACCAGTGACTTTTTTGTCCCTAAGTTCAGAAACATGAAAATAGATTATTATGACTTACGACCAGAAAGGCGAAAACTGTACCCATCTGACTTAATCTGAAGGTTAGTGTTAATTTGGACATCTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04372	1371	6989	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004372s00041123.1	PF01582.15	TIR	8	72	5.80E-14
Glyur004372s00041123.1	PF00931.17	NB-ARC	108	242	2.90E-23
Glyur004372s00041123.1	PF13504.1	LRR_7	407	424	5.3
Glyur004372s00041123.1	PF13504.1	LRR_7	477	494	3.7
Glyur004372s00041123.1	PF00560.28	LRR_1	630	651	0.11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.650
SRR1783600	control	0.599
SRR1783602	moderate drought stress	1.741
SRR1811619	moderate drought stress	1.814

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.462
DRR006520	Root Summer glycyrrhizin high producing strain	2.294
DRR006521	Root Winter glycyrrhizin high producing strain	0.898
DRR006522	Root Winter glycyrrhizin high producing strain	0.883
DRR006523	Root Summer glycyrrhizin low producing strain	2.547
DRR006524	Root Summer glycyrrhizin low producing strain	2.852
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.713
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.609

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.662
SRR2868004	Drought Stress (root)	3.892
SRR2967015	Control (root)	8.625

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.483
SRR9715740	Leaf	0.623
SRR9715741	Leaf	0.527
SRR9715739	Root	0.000
SRR9715742	Root	1.819
SRR9715743	Root	1.029

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.482
SRR8749028	MeJA induced 9h	3.809
SRR8749029	MeJA induced 9h	5.965
SRR8749030	Uninduced	1.325
SRR8749031	Uninduced	0.762
SRR8749032	Uninduced	2.144

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.533
SRR8400027	Control - Root	1.735