Gene detail information of Glyur004340s00039821.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G36850.1 | 0 | glucan synthase-like 8 |
| NR | XP_004501831.1 | 0 | PREDICTED: callose synthase 10-like [Cicer arietinum] |
| Swissprot | tr|Q9SJM0|CALSA_ARATH | 0 | Callose synthase 10 |
| trEMBL | tr|A0A072V9X9|A0A072V9X9_MEDTR | 0 | Callose synthase-like protein {ECO:0000313|EMBL:KEH34985.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04340 | 52 | 15295 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT48 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004340s00039821.1 | PF14288.1 | FKS1_dom1 | 318 | 429 | 9.00E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.711 |
| SRR1783600 | control | 9.573 |
| SRR1783602 | moderate drought stress | 9.065 |
| SRR1811619 | moderate drought stress | 9.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.699 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.576 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.670 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.859 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.772 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.103 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.729 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.594 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.699 |
| SRR2868004 | Drought Stress (root) | 22.086 |
| SRR2967015 | Control (root) | 22.922 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.438 |
| SRR9715740 | Leaf | 2.924 |
| SRR9715741 | Leaf | 5.031 |
| SRR9715739 | Root | 2.854 |
| SRR9715742 | Root | 18.045 |
| SRR9715743 | Root | 13.488 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.875 |
| SRR8749028 | MeJA induced 9h | 23.858 |
| SRR8749029 | MeJA induced 9h | 4.076 |
| SRR8749030 | Uninduced | 6.051 |
| SRR8749031 | Uninduced | 3.604 |
| SRR8749032 | Uninduced | 3.593 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.395 |
| SRR8400027 | Control - Root | 29.890 |