Gene detail information of Glyur004337s00047558.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G36020.1 | 5.00E-16 | cold shock domain protein 1 |
| NR | XP_007137378.1 | 6.07E-53 | hypothetical protein PHAVU_009G122300g [Phaseolus vulgaris] |
| COG | YP_003212288.1 | 1.00E-19 | RNA chaperone/anti-terminator [Cronobacter turicensis z3032] |
| Swissprot | tr|O65639|CSP1_ARATH | 3.00E-29 | Cold shock protein 1 |
| trEMBL | tr|V7AUP7|V7AUP7_PHAVU | 2.00E-53 | Uncharacterized protein {ECO:0000313|EMBL:ESW09372.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04337 | 7611 | 8141 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | CSD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004337s00047558.1 | PF00313.17 | CSD | 8 | 72 | 5.70E-23 |
| Glyur004337s00047558.1 | PF00098.18 | zf-CCHC | 121 | 137 | 7.80E-08 |
| Glyur004337s00047558.1 | PF00098.18 | zf-CCHC | 157 | 173 | 1.00E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.403 |
| SRR1783600 | control | 5.571 |
| SRR1783602 | moderate drought stress | 9.090 |
| SRR1811619 | moderate drought stress | 9.326 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.325 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.945 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.083 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.943 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.209 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.769 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 56.017 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 52.684 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.482 |
| SRR2868004 | Drought Stress (root) | 28.816 |
| SRR2967015 | Control (root) | 32.390 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 50.572 |
| SRR9715740 | Leaf | 92.017 |
| SRR9715741 | Leaf | 37.411 |
| SRR9715739 | Root | 11.648 |
| SRR9715742 | Root | 6.504 |
| SRR9715743 | Root | 6.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.040 |
| SRR8749028 | MeJA induced 9h | 8.834 |
| SRR8749029 | MeJA induced 9h | 6.498 |
| SRR8749030 | Uninduced | 1.487 |
| SRR8749031 | Uninduced | 0.419 |
| SRR8749032 | Uninduced | 1.508 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.351 |
| SRR8400027 | Control - Root | 17.440 |