Gene detail information of Glyur004333s00043388 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32180.1 | 2.00E-49 | plastid transcriptionally active 18 |
| NR | NP_001240874.1 | 3.55E-74 | uncharacterized protein LOC100776314 [Glycine max] |
| COG | YP_003528257.1 | 1.00E-14 | hypothetical protein Nhal_2804 [Nitrosococcus halophilus Nc 4] |
| trEMBL | tr|C6TK04|C6TK04_SOYBN | 1.00E-74 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G43810.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04333 | 769 | 1209 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004333s00043388.1 | PF05899.7 | Cupin_3 | 47 | 120 | 2.50E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.687 |
| SRR1783600 | control | 7.799 |
| SRR1783602 | moderate drought stress | 5.573 |
| SRR1811619 | moderate drought stress | 6.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.801 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.257 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.449 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.920 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 27.487 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 27.696 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 29.410 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.624 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.662 |
| SRR2868004 | Drought Stress (root) | 35.051 |
| SRR2967015 | Control (root) | 37.448 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 127.051 |
| SRR9715740 | Leaf | 120.041 |
| SRR9715741 | Leaf | 112.791 |
| SRR9715739 | Root | 22.302 |
| SRR9715742 | Root | 30.795 |
| SRR9715743 | Root | 27.781 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.637 |
| SRR8749028 | MeJA induced 9h | 11.745 |
| SRR8749029 | MeJA induced 9h | 16.489 |
| SRR8749030 | Uninduced | 12.239 |
| SRR8749031 | Uninduced | 11.581 |
| SRR8749032 | Uninduced | 12.845 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 55.670 |
| SRR8400027 | Control - Root | 55.454 |