Gene detail

Gene detail information of Glyur004326s00041197.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G08720.2	1.00E-145	serine/threonine protein kinase 2
NR	XP_003544270.1	0	PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like isoform X1 [Glycine max]
COG	YP_548084.1	6.00E-30	serine/threonine protein kinase [Polaromonas sp. JS666]
Swissprot	tr\|Q39030\|KPK2_ARATH	0	Serine/threonine-protein kinase AtPK2/AtPK19
trEMBL	tr\|I1MB56\|I1MB56_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G36660.1}

Sequence

Transcript Sequence

>Glyur004326s00041197.1
CCTTTGTTAACTGCTCTGCTCTCTGCATTCTCCTCCATCTTCAATCACTGACTGACAACCTGATCTTCATGAATTTAAGAATTACTGCTGCATCCACTGTTTCCTGTAAACCGGGAAGCAACAACAATTTCTTTTTCTGGATTCTGGTTTGCCTGTTGGATTTCCATCTTCCTCCAATTCTGGTCTTCAATCTTTTGACAAGGAACACCTATATAGTACTGAAGACTGATCTTGGCCAATTTTCTGAACTCTCCTGATTTTATCTAAGAACAACCATGGTTTCCTCTCAGTTCTGTGCCTTAAATGGAAATACTTCACAGAGGCCTTTCTTGAACCAGTTGCTTCTTCCAAGTGGACCTTCACCTCTTGATGTTGTGGATTTTGAATTTTCTGATGTGATTGGTCCATCTACTGTTGAAGCCTCAATAGGAGNGAGCTCAGAGAAACCTGGAAATCTGGTAGTTACACCAGGTTCAAGTGAAAAGCTTCACAATGATCCTGCTTCCATTCAGATAGTGGCCCCCACAACCTATATTAGTCAATCTTTGGAGCTTAGCAAGCTCACCTTACATGAGACAGGTGATGCACAGGATCTTGTGGAGGAGGTCTTTAGAGAAACACAAAAAGAACTTAAGGAACATTATGTTAATAAAGCTGCTGCAGAGAAAAGCAATTTACATTTCAATAGTTATTGTTTGAATTTTAAGCCTATAGGAGNTGAGGATTTTGAAGTTTTGAAGGTTGTTGGGCAAGGTGCTTTTGGTAAGGTGTACCAGGTGAGGAGGGCAGGTACTTCAGAAATATATGCTATGAAGGTCATGCAAAAGGANAGGATTATACAGAGAAATCATGCTGAATATGTAAAATCTGAAAGGGATATATTGACAAAGGTGGACCACCCGTTTATCGTGCGGCTCAGATACTCATTCCAAACCAAATTAAGGTTGTACCTTGTGCTTGATTTTGTCAATGGTGGTCACCTTTTCTTTCAGCTTTATCGCCAAGGCCTATTCAGGGAAGATTTGGCACGCTTCTATACTGCAGAGATTGTTTGTGCTGTTTCTCATCTTCATGCAATCGGTATAATGCACAGGGACCTTAAACCTGAAAATGTTCTTCTTGATGCAGAAGGNCATGTAGTGTTGACAGATTTTGGACTGGCTAAACAATTCAACGAGACTGCAAGGTCAAATTCTATGTGCGGAACTTTGGAATACATGGCCCCGGAAATTGTTATGTGGAAAGGTCATGATAAGACAGCAGATTGGTGGAGTGTGGGAATTTTAGTGTATGAAATGCTTACAGGAAAGCCTCCTTTTGCTGGTGGAAATAGACAAAAGATCCAGCAGAAGATAATTAAAGACAAAATCAAGCTCCCAGCTTTTTTATCTAATGCCAGCAAACGCCTTGGTAGTGGACCAAGTGGCAGTGAGAAGATTAAAAGCCACAAGTGGTTNAAGTCAGTCAATTGGAAGAAACTGGAAGCCCGTGAAATCAGGCCAAGCTTTGTCCCACAAGTTGCTGGGAAGCACTGTGTTGCTAACTTTGAGGAGAGGTGGACTACCATGCCCTTGCTGGATTCTCCAGCTGCTAGTCCCAAAAATGGTGACATGACCTTCAATAAGTTCTCATATACTGGTACTCCTACTGTGCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04326	249	4520	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04688	RPS6KB	EC:2.7.11.1	ErbB signaling pathway	map04012
			TGF-beta signaling pathway	map04350
			HIF-1 signaling pathway	map04066
			PI3K-Akt signaling pathway	map04151
			AMPK signaling pathway	map04152
			mTOR signaling pathway	map04150
			Autophagy - animal	map04140
			Fc gamma R-mediated phagocytosis	map04666
			Insulin signaling pathway	map04910
			Longevity regulating pathway - mammal	map04211
			Longevity regulating pathway - worm	map04212
			Longevity regulating pathway - multiple species	map04213
			Choline metabolism in cancer	map05231
			Proteoglycans in cancer	map05205
			Acute myeloid leukemia	map05221
			Breast cancer	map05224
			Insulin resistance	map04931
			EGFR tyrosine kinase inhibitor resistance	map01521
			Endocrine resistance	map01522

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0004674 protein serine/threonine kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004326s00041197.1	PF00069.20	Pkinase	151	369	1.10E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.458
SRR1783600	control	1.507
SRR1783602	moderate drought stress	1.272
SRR1811619	moderate drought stress	1.344

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.189
DRR006520	Root Summer glycyrrhizin high producing strain	2.159
DRR006521	Root Winter glycyrrhizin high producing strain	1.173
DRR006522	Root Winter glycyrrhizin high producing strain	1.145
DRR006523	Root Summer glycyrrhizin low producing strain	4.432
DRR006524	Root Summer glycyrrhizin low producing strain	4.917
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.647
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.620

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.746
SRR2868004	Drought Stress (root)	3.247
SRR2967015	Control (root)	2.597

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.057
SRR9715740	Leaf	1.314
SRR9715741	Leaf	0.736
SRR9715739	Root	0.694
SRR9715742	Root	3.541
SRR9715743	Root	2.219

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.352
SRR8749028	MeJA induced 9h	1.021
SRR8749029	MeJA induced 9h	0.552
SRR8749030	Uninduced	1.857
SRR8749031	Uninduced	0.461
SRR8749032	Uninduced	0.798

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.187
SRR8400027	Control - Root	5.590