Gene detail

Gene detail information of Glyur004324s00041657

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15940.1	2.00E-100	NAD(P)-binding Rossmann-fold superfamily protein
NR	AES68517.2	0	rossmann-fold NAD(P)-binding domain protein [Medicago truncatula]
COG	YP_005845262.1	3.00E-33	dehydrogenase [Ignavibacterium album JCM 16511]
Swissprot	tr\|A2RVM0\|TIC32_ARATH	1.00E-24	Short-chain dehydrogenase TIC 32, chloroplastic
trEMBL	tr\|G7J0B2\|G7J0B2_MEDTR	0	Rossmann-fold NAD(P)-binding domain protein {ECO:0000313\|EMBL:AES68517.2}

Sequence

Transcript Sequence

>Glyur004324s00041657.1
GCAACAATTAGGCTCGAGCGTTGACATTTTCAACGGGTGAGCGGATGCAAATTTCTCTCATCCCTCGTATTATCATTCTCTCTCTTCTCCCCCTAATAATCTTAACTGCCAACAACTGAAAGCGTAAATACTCTTATCTTCCTCCTGACGAATTACAACAATGGGAGTGATTATGATGGTGAAGGATTTGTGGAGGGCCCTCTTTTTCGTTTGCTCAATTCAATTCTGGAGAATGGGGTTGCTGTGGACACTCTCTGTTCTATTCTCTCATTACCAATTGCTTAAAGNTTCACTCTTTTCTCAGAAACTCGTNTCCTATCCCAGGTGCTCCCCTTCCACATTTCCCCATAGACCTGTTTGCGTCATCACTGGTGCAACATCTGGCCTCGGATTAGCTACTGCTTGCGAACTTTCCAAGGAAGGATATGTTGTTGTCATTGTGGGACGATCCCAGCAGTTATTGTCGGAGACCATCAGAAAGATCAAAGGTATAAATGAAGATGTCCACCTTAAAGATTTTCAGGTTGACCTTGCATCAGTTGAGTCAATTANAAAGTTCAAGACATCCTTGCAGCAGTGGCTGTTGGATTCTGATTTGCACTGCTCGGTACAAGTACTGATGAACAATGCTGGAATACTTGCAACATCACCTAAAGTCACAGCTGAGGGCTATGATCAGATGATNGCTACAAATTATATTGGTGCATTTGTGTTAACCAAGCTTCTATTACCACTTCTTGAAAGCAGTCCTGTGTCTTCCAAAATTGTGAATGTANCATCCTTTACTCATCGAGCTGTTTCTGATATGCAGGTTGATGAGGGAACTGTATCTGGGAAGAGATTTTTGAGTTCAAAACAATATCCATATGCTCAGATCTATGAGTATTCCAAATTATGCCTACTTCTCTTCTCATTCGAGCTTCACCGACAGCTTTGCTTAATGGGTAAATCTCACCAGATATTTGTCAATGTTGCAGATCCTGGAGTTGTAAAGACAAACATGATGCGAGAANTTCCAGCAAGCCTATCTTGTTTGGCATTCTTTGTACTGAAACGTCTACGCCTATTGCAATCCCCTGAGTGTGGGATTAGTTCTATTATTGATGCTGCTCTTGCTCCNCCGGGGACATCAGGAGCTTATTTTTTTGGGGGGAAAGGTAGAACTATAAATCCATCAGCACTTTCACGAAACGCCAAGTTAGCACATGAGCTTTGGGAAACTACATGTAATCTGCTTTCGGCTACCCCCTTTGGTAATGAGAAAAACAGTTGNTAGCATTGGATTGCATGTCATGTTGGTATAACAAAAAGAGTAGCCGAGTAGGTGCTACTTAATTACCTCATGTAGATTGATTAGTGATAACCCATTCTTCATATGAAGTNTTGAGGTTTCTCTTAAAAAGCTGGCAAAAAATATTAATTATTTTCTAAGATAAAGTGTGTGTTTGTTTTTCCGTTGGGAGCTATCAAAACTNAGATTCGAGGCAAAGCAACAATTTATTCATTTTCACAAACGTAGCTTTGGAAAGAGTACCAACGGAATTTGAATGACTATCCAAACACAAATTAGTCCAAACACACATTAGTGTAAGAGCTGTTGTAAAAGTATAAAACCATTCATATATTTCATTTGGATGGTTGGTTATTGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04324	2780	8422	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004324s00041657.1	PF00106.20	adh_short	66	210	1.30E-15
Glyur004324s00041657.2	PF00106.20	adh_short	66	210	1.10E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.844
SRR1783600	control	2.660
SRR1783602	moderate drought stress	2.176
SRR1811619	moderate drought stress	2.297

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.521
DRR006520	Root Summer glycyrrhizin high producing strain	3.718
DRR006521	Root Winter glycyrrhizin high producing strain	4.260
DRR006522	Root Winter glycyrrhizin high producing strain	4.572
DRR006523	Root Summer glycyrrhizin low producing strain	2.031
DRR006524	Root Summer glycyrrhizin low producing strain	2.003
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.467
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.439

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.762
SRR2868004	Drought Stress (root)	5.345
SRR2967015	Control (root)	5.812

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.888
SRR9715740	Leaf	8.292
SRR9715741	Leaf	7.482
SRR9715739	Root	1.142
SRR9715742	Root	2.438
SRR9715743	Root	1.525

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.597
SRR8749028	MeJA induced 9h	3.471
SRR8749029	MeJA induced 9h	1.180
SRR8749030	Uninduced	4.174
SRR8749031	Uninduced	1.143
SRR8749032	Uninduced	0.977

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.893
SRR8400027	Control - Root	8.638