Gene detail information of Glyur004316s00042459 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G10260.3 | 1.00E-83 | Reticulon family protein |
| NR | XP_007141449.1 | 5.05E-155 | hypothetical protein PHAVU_008G196600g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SS37|RTNLH_ARATH | 1.00E-108 | Reticulon-like protein B8 |
| trEMBL | tr|V7B9A0|V7B9A0_PHAVU | 2.00E-155 | Reticulon-like protein {ECO:0000256|RuleBase:RU210713} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04316 | 5208 | 12838 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004316s00042459.1 | PF02453.12 | Reticulon | 70 | 230 | 1.70E-48 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.481 |
| SRR1783600 | control | 16.575 |
| SRR1783602 | moderate drought stress | 12.359 |
| SRR1811619 | moderate drought stress | 12.727 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.780 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 30.498 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.861 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.428 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.951 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.662 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.438 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.312 |
| SRR2868004 | Drought Stress (root) | 23.758 |
| SRR2967015 | Control (root) | 23.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.443 |
| SRR9715740 | Leaf | 17.694 |
| SRR9715741 | Leaf | 27.330 |
| SRR9715739 | Root | 18.878 |
| SRR9715742 | Root | 15.714 |
| SRR9715743 | Root | 16.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.664 |
| SRR8749028 | MeJA induced 9h | 14.341 |
| SRR8749029 | MeJA induced 9h | 17.090 |
| SRR8749030 | Uninduced | 7.436 |
| SRR8749031 | Uninduced | 5.061 |
| SRR8749032 | Uninduced | 6.982 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 37.471 |
| SRR8400027 | Control - Root | 39.951 |