Gene detail

Gene detail information of Glyur004315s00043116

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G15810.1	1.00E-34	Protein of unknown function (DUF567)
NR	AFK37784.1	1.96E-56	unknown [Lotus japonicus]
Swissprot	tr\|Q9LVZ8\|LOR12_ARATH	4.00E-42	Protein LURP-one-related 12
trEMBL	tr\|I3SBZ2\|I3SBZ2_LOTJA	7.00E-57	Uncharacterized protein {ECO:0000313\|EMBL:AFK37784.1}

Sequence

Transcript Sequence

>Glyur004315s00043116.1
ATTGTTTCCCCATATCACAAAGACACGTTTTCTAACACGGAAAACGGAGCTCCAAGCTCCCCTCCATACATACACACTTATAAATAATAATCTTCCTCTTAACGCTCCCACTTGGTTCAGCTTTCACTTCCAAGATTCCAATTCTTGTTTGTTGCTGATCGAGATAAAAAAGAAGAATGAATGAGGAGTTGGTTGTGCAGAATGGGTATGTGTTTAAAGAAGAGACCCACCTCACGGTGCTGAAAACCTCTCTGTTCTTTGCTGGTGATGGCTTTGCGGTGTATGATTGTAAGGGCCAACTCGTCTTCCGGTTCGACTCATATGGACCCCACACTCGTGATAAGGACGAGCTTGTCTCATGGATCCCCCATGGCCGTTCTCTTCTCACCCTTCGCCGAAAGAAACCGAGTCTTCATCAACGGTGGGAAGGGTTCAGAGGGGAGAGAACGGACGGTGATAAACCGATATTCAGCGTGAAGGAGATCGTCGATAATCGGACGGTCAAATACGAGCGTAACGGTGGAGGTGTACGATAAACCCGGTATGGAGTACCTCATTGAAGGGTGCTTCCCGCAACGGTGCTGCAAAGTTTTCAATGCATCGAAGAAATTAGTGGCTGAGATTCGTCGCAAAGTGGACCCCACCACCAGCGTTATGCTTGGGAAGGAAGTGTTCATGCTTTGCGTTCAACCGGGTTTTGATGGAGCCTTTGCCATGGATTGATCTTGGTACTTGATCAGATCAACGGTGAGACTTTCTTTGACAGTGGGACTACGGAGCCTGCGGTGCACCCTGCTACAGAAGATTGAGGACTTGCTTCTCTTCGGTTCTATTTCTAGATTTGTCTTTAAACGGCCACTTTGGTCCCTGAGAGTGTCAAACGGTGTCACTTTAATCCCTAACAGATGCGAATTAGTCACTTTGGTTTCTGTCATCAAGAAAGTAATCATTTTCAGAGACTAAAATGATATTTAAGTAATCACTTTTATGAACCAAAATGACAGTAAGTAATCACTTTCAGCCTCAGGGACCAAAGTGACTAACAACTGACGGTACTTGAGAACCAAAGTGACTAATTCATATTTGTCAGGGACCAAAGTGACATCGTCTAACACTCTCAGAGACTAAAATAACTGTTTACTCTTTTAAATTCCCACTCACTAATCTTTGGAGTTTGGAATGTCCCCTCAAAAGGGTTCATCTCACTTAAAAAAAATTAATGATCTTCTCAAATCATCTTAATTTAATTTCCTCTTTTTTGATTTGTCCTGTTAAAATGATGTACATTTCCACTTTTCAACAATCTAAGTCATCCCTCAATTAAATAAAATTGGTGTTCCCATTTCCACATGTTGCAAGTAGGGATGGCAATATGTGCCCAGTCCAACAACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04315	13047	15624	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004315s00043116.1	PF04525.7	Tub_2	6	107	3.70E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	32.726
SRR1783600	control	30.962
SRR1783602	moderate drought stress	34.007
SRR1811619	moderate drought stress	33.724

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.512
DRR006520	Root Summer glycyrrhizin high producing strain	14.407
DRR006521	Root Winter glycyrrhizin high producing strain	12.607
DRR006522	Root Winter glycyrrhizin high producing strain	12.635
DRR006523	Root Summer glycyrrhizin low producing strain	13.026
DRR006524	Root Summer glycyrrhizin low producing strain	12.185
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.231
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.257

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.112
SRR2868004	Drought Stress (root)	18.151
SRR2967015	Control (root)	30.877

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	82.795
SRR9715740	Leaf	126.518
SRR9715741	Leaf	97.380
SRR9715739	Root	85.982
SRR9715742	Root	34.950
SRR9715743	Root	44.912

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.799
SRR8749028	MeJA induced 9h	5.693
SRR8749029	MeJA induced 9h	6.070
SRR8749030	Uninduced	9.821
SRR8749031	Uninduced	4.954
SRR8749032	Uninduced	7.911

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.867
SRR8400027	Control - Root	22.051