Gene detail information of Glyur004309s00042811 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G30200.1 | 4.00E-15 | Plant transposase (Ptta/En/Spm family) |
| NR | XP_007151940.1 | 8.32E-120 | hypothetical protein PHAVU_004G088700g [Phaseolus vulgaris] |
| trEMBL | tr|V7C1B5|V7C1B5_PHAVU | 3.00E-120 | Uncharacterized protein {ECO:0000313|EMBL:ESW23934.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04309 | 8126 | 9995 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004309s00042811.1 | PF03004.9 | Transposase_24 | 162 | 240 | 5.60E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.664 |
| SRR1783600 | control | 1.686 |
| SRR1783602 | moderate drought stress | 3.911 |
| SRR1811619 | moderate drought stress | 3.708 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.836 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.950 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.050 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.683 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.923 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.939 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.726 |
| SRR2868004 | Drought Stress (root) | 6.469 |
| SRR2967015 | Control (root) | 5.119 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.588 |
| SRR9715740 | Leaf | 2.693 |
| SRR9715741 | Leaf | 3.825 |
| SRR9715739 | Root | 0.300 |
| SRR9715742 | Root | 1.803 |
| SRR9715743 | Root | 2.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.064 |
| SRR8749029 | MeJA induced 9h | 0.029 |
| SRR8749030 | Uninduced | 0.797 |
| SRR8749031 | Uninduced | 1.128 |
| SRR8749032 | Uninduced | 0.237 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.864 |
| SRR8400027 | Control - Root | 10.725 |