Gene detail information of Glyur004304s00043826 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G39160.3 | 4.00E-55 | RmlC-like cupins superfamily protein |
| NR | XP_004513532.1 | 2.61E-106 | PREDICTED: germin-like protein subfamily 1 member 7-like [Cicer arietinum] |
| Swissprot | tr|Q6YZA9|GL82_ORYSJ | 8.00E-73 | Germin-like protein 8-2 (Precursor) |
| trEMBL | tr|Q9SC39|Q9SC39_PEA | 3.00E-102 | Germin-like protein {ECO:0000313|EMBL:CAB65370.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04304 | 3181 | 4390 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004304s00043826.1 | PF00190.17 | Cupin_1 | 17 | 162 | 4.00E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 62.322 |
| SRR1783600 | control | 61.219 |
| SRR1783602 | moderate drought stress | 44.456 |
| SRR1811619 | moderate drought stress | 42.998 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 167.005 |
| SRR2868004 | Drought Stress (root) | 72.918 |
| SRR2967015 | Control (root) | 50.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 107.458 |
| SRR9715742 | Root | 94.668 |
| SRR9715743 | Root | 83.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 111.601 |
| SRR8749028 | MeJA induced 9h | 1597.280 |
| SRR8749029 | MeJA induced 9h | 162.161 |
| SRR8749030 | Uninduced | 817.822 |
| SRR8749031 | Uninduced | 128.245 |
| SRR8749032 | Uninduced | 303.915 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 82.170 |
| SRR8400027 | Control - Root | 26.761 |