Gene detail information of Glyur004277s00041930 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G48250.1 | 8.00E-160 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004515902.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic-like [Cicer arietinum] |
| Swissprot | tr|Q9STK5|PP269_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g48250, chloroplastic (Precursor) |
| trEMBL | tr|A0A072URS9|A0A072URS9_MEDTR | 0 | PPR containing plant protein {ECO:0000313|EMBL:KEH31768.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04277 | 8395 | 10350 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004277s00041930.1 | PF13812.1 | PPR_3 | 285 | 313 | 0.086 |
| Glyur004277s00041930.1 | PF13041.1 | PPR_2 | 431 | 475 | 1.50E-14 |
| Glyur004277s00041930.1 | PF01535.15 | PPR | 548 | 564 | 1.1 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.860 |
| SRR1783600 | control | 3.731 |
| SRR1783602 | moderate drought stress | 3.434 |
| SRR1811619 | moderate drought stress | 3.453 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.727 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.768 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.229 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.285 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.156 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.304 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.334 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.579 |
| SRR2868004 | Drought Stress (root) | 3.543 |
| SRR2967015 | Control (root) | 3.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.739 |
| SRR9715740 | Leaf | 1.292 |
| SRR9715741 | Leaf | 0.989 |
| SRR9715739 | Root | 1.976 |
| SRR9715742 | Root | 3.538 |
| SRR9715743 | Root | 1.953 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.667 |
| SRR8749028 | MeJA induced 9h | 3.651 |
| SRR8749029 | MeJA induced 9h | 2.064 |
| SRR8749030 | Uninduced | 0.824 |
| SRR8749031 | Uninduced | 0.051 |
| SRR8749032 | Uninduced | 0.466 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.395 |
| SRR8400027 | Control - Root | 4.610 |