Gene detail information of Glyur004267s00045339 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G44930.1 | 2.00E-52 | Plant protein of unknown function (DUF247) |
| NR | XP_003529045.1 | 0 | PREDICTED: UPF0481 protein At3g47200-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9SD53|Y3720_ARATH | 1.00E-34 | UPF0481 protein At3g47200 |
| trEMBL | tr|I1KJL9|I1KJL9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G14350.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04267 | 2572 | 8223 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004267s00045339.1 | PF03140.10 | DUF247 | 38 | 449 | 2.10E-100 |
| Glyur004267s00045339.1 | PF03140.10 | DUF247 | 504 | 928 | 8.90E-95 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.674 |
| SRR1783600 | control | 18.412 |
| SRR1783602 | moderate drought stress | 24.859 |
| SRR1811619 | moderate drought stress | 24.624 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.509 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.771 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.767 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.636 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.445 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.159 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.881 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.737 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.170 |
| SRR2868004 | Drought Stress (root) | 19.152 |
| SRR2967015 | Control (root) | 20.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.875 |
| SRR9715740 | Leaf | 0.078 |
| SRR9715741 | Leaf | 0.570 |
| SRR9715739 | Root | 3.081 |
| SRR9715742 | Root | 4.224 |
| SRR9715743 | Root | 3.810 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.698 |
| SRR8749028 | MeJA induced 9h | 5.342 |
| SRR8749029 | MeJA induced 9h | 4.561 |
| SRR8749030 | Uninduced | 12.513 |
| SRR8749031 | Uninduced | 5.539 |
| SRR8749032 | Uninduced | 2.366 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.275 |
| SRR8400027 | Control - Root | 22.380 |