Gene detail information of Glyur004266s00042148 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G02580.1 | 2.00E-22 | Plant protein 1589 of unknown function |
| NR | AFK45002.1 | 6.48E-51 | unknown [Lotus japonicus] |
| trEMBL | tr|I3SXL0|I3SXL0_LOTJA | 2.00E-51 | Uncharacterized protein {ECO:0000313|EMBL:AFK45002.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04266 | 9360 | 11086 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004266s00042148.1 | PF09713.5 | A_thal_3526 | 12 | 63 | 8.80E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 301.581 |
| SRR1783600 | control | 285.369 |
| SRR1783602 | moderate drought stress | 298.223 |
| SRR1811619 | moderate drought stress | 287.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 274.122 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 275.448 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 39.383 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 37.584 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 190.996 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 191.221 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 54.341 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 53.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.105 |
| SRR2868004 | Drought Stress (root) | 12.953 |
| SRR2967015 | Control (root) | 21.487 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.919 |
| SRR9715740 | Leaf | 5.890 |
| SRR9715741 | Leaf | 14.628 |
| SRR9715739 | Root | 28.894 |
| SRR9715742 | Root | 70.922 |
| SRR9715743 | Root | 54.825 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.821 |
| SRR8749028 | MeJA induced 9h | 4.862 |
| SRR8749029 | MeJA induced 9h | 2.955 |
| SRR8749030 | Uninduced | 7.607 |
| SRR8749031 | Uninduced | 17.459 |
| SRR8749032 | Uninduced | 21.544 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 80.083 |
| SRR8400027 | Control - Root | 117.040 |