Gene detail

Gene detail information of Glyur004266s00042147

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37400.1	8.00E-78	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004493905.1	6.30E-171	PREDICTED: uncharacterized protein LOC101501574 [Cicer arietinum]
COG	YP_007128057.1	7.00E-16	tetratricopeptide repeat-containing protein [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q9LS48\|SG1_ARATH	2.00E-41	protein SLOW GREEN 1, chloroplastic {ECO:0000303\|PubMed:24420572} (Precursor)
trEMBL	tr\|A0A072U4F2\|A0A072U4F2_MEDTR	2.00E-166	TPR superfamily protein {ECO:0000313\|EMBL:KEH24003.1}

Sequence

Transcript Sequence

>Glyur004266s00042147.1
ATGGCCTCCCTTCCCAATCCCACACCGCGCCACTCTTCTTCTCTCTCACTCAAATCCAAATCCAAATCCAATCACCACCGTCCATCGTTCCCAACTTCCTTATCCTCTTCCCTCTCCTTCCGCTCCTTCGCACCACCTCAATTCCCCTCTTCCTCGTTCAAACTATCATCCTCCACCAGAGCCTCCTCCTCAGCAAACGACCCTGCGTTTCACAAGCCCACCAGAAACACCCCTTTCCCTTCCCTACCCAACTTTCTCCAAGCCCTAAACCCTCTCTTCTCCCCCGTCGTGGAAACCACGTGCATCGTCATCGCCGCAACCGCGTTCTTCTTCATGCGCTTCCACCACAACCCCGTCATCGCAGCCCCGCTCACGGCGTCTCCTGCCACCGTCGAATCGGAAACCGCCGCGGCGGAAGAGGCGGAGAGGGCCATCGAGGAGCGGTTGAGCAACCACCCCGGCGACATCGAAGCCCTACGCGCCCTCATGGAGCTCAAAATTAGGGCACGCAAAATCGACGAAACGATTGGGGTGATTGACCGTTTGATCGAGATCGAACCGGAAGAGATGGAGTGGCCTCTGCTTAAGGCCAACATGCATATGTACAACGACGACCACGAATCGGCAAAAAAACTCTTCGAGGAGATCCTGAAGAAGGACCCGCTTCGTGTTGAAGCTTTCCACGGCCTCGTGATGGCGACTTCGGAATCGAATGAGCCGTTGAAAGGGTTGTTGAAGAGGGTCGAGGAAGCAATGGANTCGTGTAGGAAGCAGAAGAGGGTTTCGGATGTTAGGGATTTCAGGCTCCTTGTTGCGCAGATTAAAGTGATGGAAGGGGATTTCTCTGAGGCGCTGAAATCATATCAGGAATTGGTGAAGGAGGAACCGAGGGATTTTAGGCCTTATCTGTGTCAGGGTATCATATACACCTTGCTCAGAAANAAAGATGAAGCTGAGAAGCAATTTGACAAATTCCGCAGGCTTGTTCCTAAGAATCATCCTTATAAAGAGTATTTTGATGATAACATTTCTGATGGAGCTTGGGCAGCCCTCTTGGCTGAGTACCAGCCTTTGCTGAGTTCCATCGCCTTACAAGCTAGAAGCTCAGGGGGGTTGTGCCGAGTATTGGTCTACGCCCTTAATGATTCCTCTTCTCGCTATCTTCAGTCGGATATCATCCTTGGCCGGTTGATTCTGTCCAGGAACGTTGTTATTGAGCACATTGATGACACATTTTACTACATAGAAGTTAATGGGATTCCTTTTCTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04266	3951	5597	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004266s00042147.1	PF07719.12	TPR_2	196	221	0.016

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	110.272
SRR1783600	control	109.992
SRR1783602	moderate drought stress	92.315
SRR1811619	moderate drought stress	91.778

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	109.153
DRR006520	Root Summer glycyrrhizin high producing strain	106.877
DRR006521	Root Winter glycyrrhizin high producing strain	30.166
DRR006522	Root Winter glycyrrhizin high producing strain	30.550
DRR006523	Root Summer glycyrrhizin low producing strain	82.099
DRR006524	Root Summer glycyrrhizin low producing strain	82.518
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.507
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.660

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.926
SRR2868004	Drought Stress (root)	24.062
SRR2967015	Control (root)	21.230

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.698
SRR9715740	Leaf	41.385
SRR9715741	Leaf	29.601
SRR9715739	Root	71.961
SRR9715742	Root	68.858
SRR9715743	Root	61.742

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.927
SRR8749028	MeJA induced 9h	4.428
SRR8749029	MeJA induced 9h	3.706
SRR8749030	Uninduced	1.438
SRR8749031	Uninduced	0.524
SRR8749032	Uninduced	0.233

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	62.022
SRR8400027	Control - Root	59.441