Gene detail

Gene detail information of Glyur004263s00037662

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06400.1	3.00E-163	chromatin-remodeling protein 11
NR	XP_003593979.1	0	Chromatin remodeling complex subunit [Medicago truncatula]
COG	YP_001181346.1	4.00E-27	helicase domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903]
Swissprot	tr\|Q8RWY3\|ISW2_ARATH	0	Putative chromatin-remodeling complex ATPase chain
trEMBL	tr\|G7ISH3\|G7ISH3_MEDTR	0	Chromatin remodeling factor, putative {ECO:0000313\|EMBL:AES64230.1}

Sequence

Transcript Sequence

>Glyur004263s00037662.1
ATGCCGGCGAAGAGAAAGCATGCTCAAAGGTTGAAGTCAGATGTCGAGAAAGGGTTGCCACCAAAAAAGACACCATTCTTAAAGTATGAATGTCACAAATGCAGAAACAGTGCTGAACCCGGTCCTCCCTATACAACAGGAGACCATCTTATTACAAACNGTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCGAAATTAAAAGAGCGTGATTTGAGGGTCCGTATATTTTCACAGGTCAATGGCAATACTGGTGGGGATGATCGGGATGCCTCCATCGATGGTTTCAACAGACCAGGATGTGAGAAATTTGTATTCTTGTTATCAACTCGGGCTGGAGGTCTTGGTATTAATCTTGCAACTGCCGATGTCGTCATTCTGTATGATAGTGACTGGAACCCACAAGTTGACTTGCAGGCTCAGGATCGTGCACCTAGGATAGGTCAAAAGAATGAAGTTCAAGTTTTCCGTTTTTGCACTGGGTATACAATTGAGGAGAAAGTCATTGAAAGGGCTTACAAAAAGCTTACACTTGATGCTCTTGTTATTCAGCAAGGGCGATTGGCTGAGCAGAGGACGATAAATACGGATGAGTTGCTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGAAGAGGATATTGATAGAATTATTGCTAAAGGAGAAGAGGCAACTGCTGAGCTTGATGCCAAGATGAAGAAATTTACTGAAGANGCAATCAAATTTAAGATGGAAGACACTGCTGGGTTATATGATTTTGATGATGAGAAGGATGAGAACAAATTTGATTTCAAACAAATTGTGAATGAAAACTGGATTGAACTAACATATCTTAATACTTCAAGCCAAACAATGCGCCAAGGTGGTCCTAGTAAACCAAAAGAGCCCCATACTCCTAGGATGCCTCAGTTGCATGATTTCCAGTTTTTCAACACACAAAGACGGAGTGAGCTGTATGAAAAAGAAGTACGCTATCTCATGCAAACACATCAGAAGAATCAGATAAAGGACTGGATAGATGTTGATGAAAGAGAAGAAAAGGAACGCCTGCTAGAAGAGGGATTTTCATCATGGAGCCGGAGAGATTTTAATACCTTCATCAGGGCCTGTGAAAAATATGGCCGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGAAAAACTGAAGAGGAAGTTGAAAGATATGCAAAGGTCTTCAAAGAAAGATACAACGAATTAAATGGTATGTTACAGCCAATGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04263	3967	6850	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0043044 ATP-dependent chromatin remodeling

cellular_component
GO:0016589 NURF complex

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

GO:0016887 ATPase activity

GO:0031491 nucleosome binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004263s00037662.1	PF00271.26	Helicase_C	79	148	1.30E-10
Glyur004263s00037662.1	PF09110.6	HAND	290	356	9.10E-05
Glyur004263s00037662.2	PF00271.26	Helicase_C	35	114	1.20E-13
Glyur004263s00037662.2	PF09110.6	HAND	256	322	8.00E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.275
SRR1783600	control	0.918
SRR1783602	moderate drought stress	4.572
SRR1811619	moderate drought stress	5.022

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.657
DRR006520	Root Summer glycyrrhizin high producing strain	4.628
DRR006521	Root Winter glycyrrhizin high producing strain	9.907
DRR006522	Root Winter glycyrrhizin high producing strain	8.990
DRR006523	Root Summer glycyrrhizin low producing strain	2.799
DRR006524	Root Summer glycyrrhizin low producing strain	1.627
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.491
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.872

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.226
SRR2868004	Drought Stress (root)	3.317
SRR2967015	Control (root)	2.937

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.197
SRR9715740	Leaf	3.352
SRR9715741	Leaf	6.061
SRR9715739	Root	0.318
SRR9715742	Root	2.543
SRR9715743	Root	2.821

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.524
SRR8749028	MeJA induced 9h	4.999
SRR8749029	MeJA induced 9h	0.985
SRR8749030	Uninduced	1.518
SRR8749031	Uninduced	1.622
SRR8749032	Uninduced	0.535

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.445
SRR8400027	Control - Root	28.639