Gene detail

Gene detail information of Glyur004244s00040333

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G24060.1	1.00E-96	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_004516701.1	0	PREDICTED: uncharacterized protein At3g49140-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q0WMN5\|Y3913_ARATH	5.00E-114	Uncharacterized protein At3g49140
trEMBL	tr\|G7KLG5\|G7KLG5_MEDTR	0	PPR superfamily protein, putative {ECO:0000313\|EMBL:AES75634.1}

Sequence

Transcript Sequence

>Glyur004244s00040333.1
CCTCATCTTCTAACCTCAACCGCTGTGGATCTCTCATAACACTCNTTCTTTGAGAAACCAAAAAAACCAAACCATGATGATAATCGAGCCTCCCANCGCCGTCCGGTTCCTCGTCGGCGGCGCCGCCGCCCGCTCCGCCGCTGCCGCACCTCATAATAATAATAACCGTTCAATGTGGAGCGCCGCGGAGGAAGTGAAGTTGCCAAGAAACGAAAATGGCTTCGGTTACGTGGCGTCGGTAAGAAGTAAAAAATACCATGGCACTCCCTTTACAAGAAGAAACAAACTTGTAAAGAATAGAATTCAAGCATCATCAGAGCATTCTGGTTCAGATCAGGATCCTGAAAAGAAAAATGAGAAGCCNTCCTATCATCCATCTGAGGAAATAGCTGCGCCGACATTGGAGAATAGTGGAGATGCTAAACTTACTGCAGCAGAAACAAGTAGAACAATTATTGAGGTTAACAGCAAAGCAACACTGATGTTCTCAAGTTTGATTGATGATGAATTTCATGAAAATATTGTTTGGCCAGATTTGCCTTATTTGACCGATGAACATGGAAATATATATTTTCAAGCAAAGAATGGTGAAGATGTTTTGCAGTCCCTAACTTCAGAAAATAGTTTTGTGCAAGTCATTGTTGGTGTGGATGCCATGGAAATGATCTCCGAGATGGACTTATCAGGTCCTTCAGAAATTGACTTCGGGATTGAAGAAATTGATGATCAAGATACTGATGNTTTAGATGATAGTGATGAAGAGGATGAAGATGAAGATGAAGATGAGAATGAGGATTATGACTCGGAATGGCTGGCTGTTCTTTCAGATGAGGATGAGCAAGAAGATGCTGATGAAACACTTGCAGACTGGGCAAAATTGGAGACCATGCGATCTTCTCATCCCATGCATTTTGCCAAAAAGTTGGCTGAGATTGCTTCAGATGATCCAGTTGACTGGATGGAGCAGCCTCCAGCTTGTGTAGTCATCCAAGGGGTTATAAGACCTGCTTTTATTGAAGAACATTCTACAATAAGGAANCATCCACCTGCCGATCAAACCAATAATACTGAAATCAGTAAATTCATAGAAAATAAAGGGGAAAATTTTGGTGCGGTTAATGGTTATGTGCATAATTCAGGGTCATCTAGAGATAATGCATCACAACAGGTGGAAAATAATGGGAATAGTGATAACTCTTTTGATGAGACTTCATTTTACAGATTGGAGATGGTTAAGATTCAAGTGCTTTCTGCACATGGACATCCTACTGTTCTTGAATTAGAAGACTACACAAATGCTCAACCTGATGCTATTGCAAAATCATCTTCCAAAATTATATCTCATTTGAAAGCTGGTGGAGAAAAGACCTTACAAGCCCTCAAGTCTTTATGTTGGAGATGCAAGGGTATTCAAGTGGAGGAGGCACAACTTATCTCCGTTGACTCCCTTGGGTTTGACCTAAGGGCTACGTCAGAATACAGTGCAGAGAGACAACTGAATGATTTACTATTTCCAATAAGTCAACCAAAGCAGCAAAAAAAGAAGCAAACACATCAAAATGAATGCTAAAAATGTCCAAATGTCATATCCTGAGTGAATTTTGTATGGCTAAGTGAGAGGCAGGGAAAAAGATCCCATGCAGATGCCAATCAGGTTATGTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04244	3472	11630	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0010181 FMN binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.711
SRR1783600	control	2.720
SRR1783602	moderate drought stress	2.672
SRR1811619	moderate drought stress	2.763

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.423
DRR006520	Root Summer glycyrrhizin high producing strain	4.462
DRR006521	Root Winter glycyrrhizin high producing strain	6.505
DRR006522	Root Winter glycyrrhizin high producing strain	6.168
DRR006523	Root Summer glycyrrhizin low producing strain	4.862
DRR006524	Root Summer glycyrrhizin low producing strain	4.973
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.574
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.085

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.298
SRR2868004	Drought Stress (root)	4.490
SRR2967015	Control (root)	4.582

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.651
SRR9715740	Leaf	14.581
SRR9715741	Leaf	11.551
SRR9715739	Root	0.526
SRR9715742	Root	2.642
SRR9715743	Root	2.794

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.427
SRR8749028	MeJA induced 9h	4.922
SRR8749029	MeJA induced 9h	5.891
SRR8749030	Uninduced	2.409
SRR8749031	Uninduced	1.138
SRR8749032	Uninduced	1.401

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.311
SRR8400027	Control - Root	5.510