Gene detail information of Glyur004241s00042393 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G46530.1 | 2.00E-66 | AWPM-19-like family protein |
| NR | NP_001237651.1 | 2.15E-103 | uncharacterized protein LOC100527291 [Glycine max] |
| trEMBL | tr|C6T3W1|C6T3W1_SOYBN | 8.00E-104 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G23230.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04241 | 14280 | 15986 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004241s00042393.1 | PF05512.6 | AWPM-19 | 15 | 155 | 6.30E-69 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.888 |
| SRR1783600 | control | 0.875 |
| SRR1783602 | moderate drought stress | 0.924 |
| SRR1811619 | moderate drought stress | 1.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.639 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.623 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.298 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.261 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.473 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.630 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.642 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.964 |
| SRR2868004 | Drought Stress (root) | 14.829 |
| SRR2967015 | Control (root) | 16.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.165 |
| SRR9715740 | Leaf | 0.442 |
| SRR9715741 | Leaf | 1.555 |
| SRR9715739 | Root | 2.590 |
| SRR9715742 | Root | 5.013 |
| SRR9715743 | Root | 4.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.094 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.996 |
| SRR8400027 | Control - Root | 3.393 |