Gene detail information of Glyur004226s00045357 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47140.1 | 1.00E-61 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | XP_003618831.1 | 3.47E-141 | Short-chain alcohol dehydrogenase [Medicago truncatula] |
| COG | YP_003099871.1 | 9.00E-45 | short chain dehydrogenase [Actinosynnema mirum DSM 43827] |
| Swissprot | tr|Q5C9I9|ISPD_MENPI | 5.00E-86 | (-)-isopiperitenol/(-)-carveol dehydrogenase, mitochondrial (Precursor) |
| trEMBL | tr|G7KNM6|G7KNM6_MEDTR | 1.00E-141 | Short-chain alcohol dehydrogenase {ECO:0000313|EMBL:AES75049.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04226 | 7891 | 8847 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004226s00045357.1 | PF13561.1 | adh_short_C2 | 25 | 261 | 9.80E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.227 |
| SRR1783600 | control | 1.329 |
| SRR1783602 | moderate drought stress | 0.072 |
| SRR1811619 | moderate drought stress | 0.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.133 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.132 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.685 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.628 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.578 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.577 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.481 |
| SRR2868004 | Drought Stress (root) | 1.054 |
| SRR2967015 | Control (root) | 0.809 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.361 |
| SRR9715740 | Leaf | 0.078 |
| SRR9715741 | Leaf | 0.884 |
| SRR9715739 | Root | 4.448 |
| SRR9715742 | Root | 3.802 |
| SRR9715743 | Root | 3.841 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.379 |
| SRR8749028 | MeJA induced 9h | 0.129 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.159 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.230 |
| SRR8400027 | Control - Root | 4.803 |