Gene detail information of Glyur004218s00043676 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G16050.1 | 1.00E-07 | Cysteine/Histidine-rich C1 domain family protein |
| NR | XP_006583724.1 | 1.51E-43 | PREDICTED: uncharacterized protein LOC102667953 [Glycine max] |
| trEMBL | tr|I1KKW3|I1KKW3_SOYBN | 6.00E-44 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G26560.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04218 | 12914 | 13673 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004218s00043676.1 | PF07649.7 | C1_3 | 23 | 52 | 1.30E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.338 |
| SRR1783600 | control | 0.272 |
| SRR1783602 | moderate drought stress | 0.024 |
| SRR1811619 | moderate drought stress | 0.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.154 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.357 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.530 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.691 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.081 |
| SRR2868004 | Drought Stress (root) | 0.107 |
| SRR2967015 | Control (root) | 0.394 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 56.331 |
| SRR9715740 | Leaf | 45.789 |
| SRR9715741 | Leaf | 39.159 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.118 |
| SRR9715743 | Root | 0.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.732 |
| SRR8749028 | MeJA induced 9h | 0.598 |
| SRR8749029 | MeJA induced 9h | 0.520 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.188 |
| SRR8400027 | Control - Root | 0.189 |