Gene detail

Gene detail information of Glyur004199s00038361

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24503.1	5.00E-106	aldehyde dehydrogenase 2C4
NR	XP_003629648.1	0	Aldehyde dehydrogenase [Medicago truncatula]
COG	YP_007058635.1	8.00E-114	NAD-dependent aldehyde dehydrogenase [Rivularia sp. PCC 7116]
Swissprot	tr\|Q56YU0\|AL2C4_ARATH	1.00E-147	Aldehyde dehydrogenase family 2 member C4
trEMBL	tr\|G7L8Y6\|G7L8Y6_MEDTR	0	Cytosolic aldehyde dehydrogenase RF2C {ECO:0000313\|EMBL:AET04124.1}

Sequence

Transcript Sequence

>Glyur004199s00038361.1
TATATGAACCCGATTTACATTTTATACGCCTTGTTTTCCCCCTTTTATAAGGCTGGAATCCCAGATGGAGTGGTCAATGTAGTACCGGGGTTTGGCCCAACTGCTGGTGCAGCAATAAGCTCACACATGGACATTGATGCGGCAATATTATATACCAAGTTCGGGGTCTGCTTTACTGGTTCGATTGAAGTAGGCCGTGAAATAATGCAGGCTGCAGCTAAGAGTAATTTAAAACCTGTTTCACTTGAATTAGGAGGCAAGTCACCTCTCATTATTTTCGACGATGCTGATATAGACAAAGCTGCTGAGCTTGCTCTCTTTGGCATTCTATTTAACAAGGGAGAAGTTTGTTGTTCAAGTTCCCGTGTGTTTGTTCAGGAAGGGATCTATGATGAAGTTGAGAAGAAGCTGGTGGAAAAGGCAAAAGCTTGGGTCGTTGGGGATCCTTTTGATCCTAAAACTCAGCAAGGACCTCAGGCTGACAGGAAACAATTNGAAAAAATTCTTTCCTATATTGAGCATGGCAAGAGAGAAGGAGCCACCCTCTTGACAGGAGGTGAAAGAGTGGGAAGCAAGGGCTACTACATTGAACCTACAATTTTCTCCAATGTAAAGGAGGACATGATTATAGCCCAGGATGAAATATTTGGTCCAGTGATGGCATTAATGAAGTTTAAGACTATTGAGGAAGCAATTAAGAGGGCAAACAATACCAAATATGGCCTAGCAGCAGGCATTGNGACCAAGAATTTGGATATTGCTAACACTATGTCAAGGTCCATTCGTGCCGGCACCATTTGGATCAACTGCTATTTNATCTTAGGGAATGGCATTCCTTTTGGAGGATGTAAGATGAGTGGATTTGGAAGAGATATGGGATTGGAAGCTCTTCATAAGTACTTACAAGTTAAATCTGTCGTTACACCTATTTACAATTCTCCTTGGCTTTGAATGTCTCTTGCAATTGCATATATGAAAACAGTCCATGCGTATGTATTTATGTGTTATTTTGTATTTTTGGTCTATTACTCTATTATGTATGTATGTATGTATGTATGCATGCATGTCTCTGATTTTATCTAACAGGGACTCATGAAAAGAAGGACGATGAGAGGCCCCCTGTTTTGTAATAGTGGGTTTAACAATAAAATAAGTTAAACAGTGGCGATGATTGACTTACAACTTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04199	14651	16557	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12355	REF1	EC:1.2.1.68	Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004199s00038361.1	PF00171.17	Aldedh	9	306	8.70E-112

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.061
SRR1783600	control	10.589
SRR1783602	moderate drought stress	20.345
SRR1811619	moderate drought stress	20.500

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.120
DRR006520	Root Summer glycyrrhizin high producing strain	6.555
DRR006521	Root Winter glycyrrhizin high producing strain	0.089
DRR006522	Root Winter glycyrrhizin high producing strain	0.091
DRR006523	Root Summer glycyrrhizin low producing strain	4.537
DRR006524	Root Summer glycyrrhizin low producing strain	4.996
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.009
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.126

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	63.255
SRR2868004	Drought Stress (root)	77.490
SRR2967015	Control (root)	69.488

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.471
SRR9715740	Leaf	1.360
SRR9715741	Leaf	0.794
SRR9715739	Root	27.623
SRR9715742	Root	40.823
SRR9715743	Root	41.546

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.684
SRR8749028	MeJA induced 9h	1.769
SRR8749029	MeJA induced 9h	3.573
SRR8749030	Uninduced	0.373
SRR8749031	Uninduced	2.030
SRR8749032	Uninduced	2.043

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	100.623
SRR8400027	Control - Root	69.225