Gene detail

Gene detail information of Glyur004198s00043831

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	3.00E-170	NB-ARC domain-containing disease resistance protein
NR	XP_004498673.1	0	PREDICTED: putative disease resistance RPP13-like protein 1-like isoform X1 [Cicer arietinum]
COG	YP_001660791.1	5.00E-12	apoptotic protease-activating factor 1 like [Microcystis aeruginosa NIES-843]
Swissprot	tr\|Q9LRR4\|R13L1_ARATH	0	Putative disease resistance RPP13-like protein 1
trEMBL	tr\|G7IYQ9\|G7IYQ9_MEDTR	0	LRR and NB-ARC domain disease resistance protein {ECO:0000313\|EMBL:AES68721.1}

Sequence

Transcript Sequence

>Glyur004198s00043831.1
ATGGAGACAATTGTTGCAGAAGCGTTCCTGTCAGCTTTTGTGGAGGTGTTGCTAGACAAGATCATATCCCGCGAGTTCGTGAACTTCTTTCAGAGCAAGAAGCTTAACGTTTCACTGCTGGAAAAGCTAAAGACAACACTGCTGAGTATTCAAGCTGTACTAAATGATGCTGAGGAGAAACAGATCAGAAATCATGCTGTCAAGCAATGGCTGGATAACCTGAGGGATGCTGTCTTTGAAGCTGATGATTTGTTAGACAAAATCAACACCGAGGCACTAAGATGCAACGTGAATAAGGTGCGGAACATCCTTTCTTCTAGTTTCAAACAGTCTTATGGGGTGATCAATTATGAAATGCAAACTTTGTTCGAAAGACTGGAACACTATGCACAAAAAGGACACTTTCTTGGATTGAAAGAAGGTGTTTCCTGCGGTGTTTGGCATGGAACTCCTACAAGTTCTGTGGTAGATGAATCTGGTATTATTGGCAGAGATGGTGACAGAAAAAAGCTTAAAGATTTTTTGCTGTTAGAAGATGCTAGTGATGGTGACAATAAAATAGGAGTGATTTCCATTGTGGGTATGGGAGGAGTTGGTAAAACAACCCTTGCTAAACTCCTTTACAATGATTCAGAAATAAAGGAGAAATTTGATTTGAAAGGGTGGGCATACATCTCAAAAGATTTTGACATTGTCAAGGTCACTAAAACCCTTCTCGAATCTATTACTCCAAAAACAATTGATGCCAATAACCTGAATATTCTACATATTGATGCTAATAACCTGAATACTCTACAAGTGCAATTGCAGCAAAGTCTAAGCCATAAGAAATTTTTGCTAGTATTGGATGACATATGGGATGCAAGCTATGTTGATTGGAACAATCTAAGGGACATCTTTAATGCAGGGGAAATGGGAAGTAAGATCATCATCACAACACGAGATGAAAGAGTTGCGCTAGCCATGCAAACCTTTATTCCTATCCACTATTTGAGACCTCTGGAAAGTGAAGATTGCTGGTCTTTAATTGCCAAACATGCATTTGGAGCAAGTAACTACCGACAACGGTCCAACCTAGAAGTAATTGGCAAAGAAATTGCCAAAAAATGTGATGGCTTACCATTAGCTGCAGTAGCACTTGGGGGTCTTCTTCGCACTAAGTTGTCCCAAGATGACTGGAATCATGTGCTAAAAAGTAACATTTGGGATTTGCCAAATGTTGCGGTGCAATCAGCTCTGCTATCAAGCTACCATTATCTTCCGGCTCCTTTAAAACGNTGCTTTGCTTATTGTTCAATTTTTCCAAAGAATTCCATCTTACATAAAAAGATGGTAGTTCAGTTGTGGATTGCAGAAGGCTTAGTACAACAGTCCAACAATGAAAGAAGTTGGGAAAAAGTAGGAGAAGAATACCTTGATGAACTAGTTTCAAGGTCACTAATACATCGACGGTTTGTTGATGGAGAAGAATGCTTTGAAATGCATGACCTCATCCATGATTTAGCTACAATGGTTTCATCCCCATATTGTATCAAGCTGGATGAACAGGAGCTAAATGAAAGGGTACGTCATTTGTCATACAATAGAGGGCCACATGACTCTTATAATAAATTCGGTGAATTGTATGGATTAAAAGGTCTGCGTACTTTCTTGGCCTTACCATTACAAGAACCGAGGTTATTACTCTATTCCATATCAAACAATGTAGTACGTGACTTGTTGCCATCAATGAAACAGTTACGCGTGCTATCTTTGTCAAACTACTGGAGTATCACCGAGTTGCCCATTTCTATTGGAAATTTGATATACCTACGATACTTAAATCTCTCTAACACTGCTATTGAAAGGTTGCCATCTGTAACATGCAAGCTTTACAATCTACAGACTTTACTGTTGTTCGGTTGTTGGTGTCTCATTGAATTGCCTGAGGACATGGGAAAATTGGTGAATTTACGCCATCTTGACATTAGAGGCACCCAGTTGAAAGACATGCCCGCACAAATAGCCAAACTACAAAATCTCCAAACTTTGTCTGACTTTATCATCAGTAAACATCGTGATGGATTGAAGATTGTAGAGCTGGGAAAATTTCCCCATCTACAAGGAAAGCTTTCCATCTCAAAGCTACAAAATGTTATTGAACCATCTGATGCTTTTCAAGCAAATTTGAAGACAAAAGAACAAATTGACAAGTTGAAACTACAATGGGATCCACATGGCAGTGATGGCACTACTAGTCAAAGTTCACAAATTGAAAGTCTTGTACTTGAACAGTTGCGGCCTTCAACAAATTTGAAGAATCTCACCATCAAAGGCTATGGTGGAACCAGCTTTCCAAATTGGTTGGGTGATTCTTCATTTGACAACTTGGCGTCTTTGCACATAGGTGGTTGTGATAACTGTTCATTGTTGCCACCCCTTGGGCAATTACAGTGTTTGAAAAAACTCTATATTGACAGTATGAAATTAGTAAAGAATGTTGGTGCTGAATTCTATGGAAGTAGTTGTCCTTCATTTCAACCATTTCCATCCTTGGAGACACTAGCAGTTTGGGACATGCCAATGTGGGAGGAATGGAACTTGATTGGAGGTACAACTACTGAGTTTCCTAGTCTAAAACATCTATCACTAGAATCATGTCCCAAACTCAAAGGCAACATACCTCTAGACATTCCTTCCTTAACTGCACTTGAGTTAAAGGCATGTGATCTTCTACTAATTTCAGGGAATTCAGCTGATAATAGGAATTCTATAGGGCCATTAAATTTAGTTAGCCAATTGATACTGCCTCCTTTCAATTCTCTACGAAAGTTGAGGATAGAAGGCTTTCCATCTTTGACGTCCTTCCCAGTAGATGGTCTACCCAAAACCTTACAATCTCTCACTATCCATGATTTTGTGAATCTGGAATTCCTTCCTCATGAATCCTTTCCCAGTTACACATCACTTGAGGAATTGACAATATTTTATAGCTGTAATTCAATGACATCCTTTACCTTGGGTTCTTTCCCTGTCCTCAAAAATCTGCATATTAGTGGTTGTAAAAATCTCAAATCAATTTTCATTGTAGAGGATGTGTCGCAAAGTCTCTCATTTCTTAGAAGCATCAAAATATGGCATTGTGATAAACTGGAGTCATTTTCCCAGGGTGGATTGCCCACTCCTAATCTCATTCGTTTGGAGGTGTGTGGGGGTAAGAAGCTTCATTCACTGCCAGAACCAATTAACACCTTTCCCGGCCTTCAAGAATTAAAAATAGTTGACCTTCCAAGTGTGCAATCTTTTGCCAAAGAGGGTTTGCCCATCAATTTAAGGGAACTGACTGTTGGCAATGTTGGAGAGATTTTGTTGAATACAACTATTACTGAGTGGAGTTTGGAACGTCTCACTTGTCTTTCGGTGTTACACATTTGGGGTGACGATATTATGAATGCATTGATGAAAATGGAAGGGCCATTGCTACCTGCTTCTCTTGTTTCCCTACACATCTCTTTACTGTGTGATATAAAATGCTTGGATGGGAAGTGGCTTTGCCATCTCACCTCTCTCCAAAACCTTGAGTTTTCATTTTGTGACAACCTCAAGTCATTGCCAGAAGATGGATTGCCTTCCTCTCTTTCTGTGCTACGTGTGTTTTGCTGCCCACTACTGAAAGCAAGCTGGCGGAGGAAGCGAGGGAAAGAGTGGCGCAAGATTGCTCGCATTCCCTCCATACATGAATGCAAATGTCCTTTATAA

Protein Sequence

>Glyur004198s00043831.1
METIVAEAFLSAFVEVLLDKIISREFVNFFQSKKLNVSLLEKLKTTLLSIQAVLNDAEEKQIRNHAVKQWLDNLRDAVFEADDLLDKINTEALRCNVNKVRNILSSSFKQSYGVINYEMQTLFERLEHYAQKGHFLGLKEGVSCGVWHGTPTSSVVDESGIIGRDGDRKKLKDFLLLEDASDGDNKIGVISIVGMGGVGKTTLAKLLYNDSEIKEKFDLKGWAYISKDFDIVKVTKTLLESITPKTIDANNLNILHIDANNLNTLQVQLQQSLSHKKFLLVLDDIWDASYVDWNNLRDIFNAGEMGSKIIITTRDERVALAMQTFIPIHYLRPLESEDCWSLIAKHAFGASNYRQRSNLEVIGKEIAKKCDGLPLAAVALGGLLRTKLSQDDWNHVLKSNIWDLPNVAVQSALLSSYHYLPAPLKRCFAYCSIFPKNSILHKKMVVQLWIAEGLVQQSNNERSWEKVGEEYLDELVSRSLIHRRFVDGEECFEMHDLIHDLATMVSSPYCIKLDEQELNERVRHLSYNRGPHDSYNKFGELYGLKGLRTFLALPLQEPRLLLYSISNNVVRDLLPSMKQLRVLSLSNYWSITELPISIGNLIYLRYLNLSNTAIERLPSVTCKLYNLQTLLLFGCWCLIELPEDMGKLVNLRHLDIRGTQLKDMPAQIAKLQNLQTLSDFIISKHRDGLKIVELGKFPHLQGKLSISKLQNVIEPSDAFQANLKTKEQIDKLKLQWDPHGSDGTTSQSSQIESLVLEQLRPSTNLKNLTIKGYGGTSFPNWLGDSSFDNLASLHIGGCDNCSLLPPLGQLQCLKKLYIDSMKLVKNVGAEFYGSSCPSFQPFPSLETLAVWDMPMWEEWNLIGGTTTEFPSLKHLSLESCPKLKGNIPLDIPSLTALELKACDLLLISGNSADNRNSIGPLNLVSQLILPPFNSLRKLRIEGFPSLTSFPVDGLPKTLQSLTIHDFVNLEFLPHESFPSYTSLEELTIFYSCNSMTSFTLGSFPVLKNLHISGCKNLKSIFIVEDVSQSLSFLRSIKIWHCDKLESFSQGGLPTPNLIRLEVCGGKKLHSLPEPINTFPGLQELKIVDLPSVQSFAKEGLPINLRELTVGNVGEILLNTTITEWSLERLTCLSVLHIWGDDIMNALMKMEGPLLPASLVSLHISLLCDIKCLDGKWLCHLTSLQNLEFSFCDNLKSLPEDGLPSSLSVLRVFCCPLLKASWRRKRGKEWRKIARIPSIHECKCPL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04198	1905	7461	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004198s00043831.1	PF00931.17	NB-ARC	184	459	7.10E-75
Glyur004198s00043831.1	PF12799.2	LRR_4	650	678	1.90E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.223
SRR1783600	control	0.197
SRR1783602	moderate drought stress	0.564
SRR1811619	moderate drought stress	0.523

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.030
DRR006524	Root Summer glycyrrhizin low producing strain	0.030
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.376
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.381

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.770
SRR2868004	Drought Stress (root)	6.303
SRR2967015	Control (root)	5.861

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.626
SRR9715740	Leaf	4.749
SRR9715741	Leaf	11.703
SRR9715739	Root	0.344
SRR9715742	Root	0.752
SRR9715743	Root	0.424

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.573
SRR8749028	MeJA induced 9h	9.847
SRR8749029	MeJA induced 9h	1.936
SRR8749030	Uninduced	3.624
SRR8749031	Uninduced	4.825
SRR8749032	Uninduced	2.021

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.878
SRR8400027	Control - Root	1.473