Gene detail information of Glyur004195s00046211.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54160.1 | 8.00E-52 | O-methyltransferase 1 |
| NR | KEH40861.1 | 2.59E-118 | caffeic acid O-methyltransferase [Medicago truncatula] |
| COG | YP_007063273.1 | 1.00E-32 | hydroxyneurosporene-O-methyltransferase [Synechococcus sp. PCC 6312] |
| Swissprot | tr|P93324|CHOMT_MEDSA | 4.00E-86 | Isoliquiritigenin 2'-O-methyltransferase |
| trEMBL | tr|A0A072VH15|A0A072VH15_MEDTR | 1.00E-118 | Caffeic acid O-methyltransferase {ECO:0000313|EMBL:KEH40861.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04195 | 895 | 1929 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13066 | E2.1.1.68, COMT | EC:2.1.1.68 | Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004195s00046211.1 | PF00891.13 | Methyltransf_2 | 2 | 173 | 3.00E-68 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.114 |
| SRR1783600 | control | 15.441 |
| SRR1783602 | moderate drought stress | 15.629 |
| SRR1811619 | moderate drought stress | 16.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.137 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.594 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.591 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.306 |
| SRR2868004 | Drought Stress (root) | 17.467 |
| SRR2967015 | Control (root) | 14.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.085 |
| SRR9715740 | Leaf | 0.040 |
| SRR9715741 | Leaf | 0.083 |
| SRR9715739 | Root | 7.223 |
| SRR9715742 | Root | 34.902 |
| SRR9715743 | Root | 29.748 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.044 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.195 |
| SRR8749030 | Uninduced | 1.138 |
| SRR8749031 | Uninduced | 2.282 |
| SRR8749032 | Uninduced | 0.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 110.967 |
| SRR8400027 | Control - Root | 87.993 |