Gene detail information of Glyur004175s00041592 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G17760.1 | 9.00E-41 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_006604052.1 | 7.50E-55 | PREDICTED: cleavage stimulation factor subunit 3-like [Glycine max] |
| Swissprot | tr|Q8GUP1|CTF77_ARATH | 7.00E-47 | Cleavage stimulation factor subunit 77 {ECO:0000303|PubMed:12379796} |
| trEMBL | tr|I1N761|I1N761_SOYBN | 3.00E-55 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G14930.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04175 | 864 | 2360 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.436 |
| SRR1783600 | control | 5.809 |
| SRR1783602 | moderate drought stress | 5.871 |
| SRR1811619 | moderate drought stress | 5.146 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.538 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.221 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.950 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.302 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.102 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.235 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.470 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.711 |
| SRR2868004 | Drought Stress (root) | 20.468 |
| SRR2967015 | Control (root) | 26.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.919 |
| SRR9715740 | Leaf | 11.430 |
| SRR9715741 | Leaf | 15.193 |
| SRR9715739 | Root | 2.463 |
| SRR9715742 | Root | 12.886 |
| SRR9715743 | Root | 10.730 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.460 |
| SRR8749028 | MeJA induced 9h | 7.830 |
| SRR8749029 | MeJA induced 9h | 3.107 |
| SRR8749030 | Uninduced | 1.307 |
| SRR8749031 | Uninduced | 1.512 |
| SRR8749032 | Uninduced | 1.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.699 |
| SRR8400027 | Control - Root | 28.661 |