Gene detail

Gene detail information of Glyur004161s00039872

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G50400.1	8.00E-47	purple acid phosphatase 27
NR	XP_004500671.1	3.31E-60	PREDICTED: probable inactive purple acid phosphatase 27-like [Cicer arietinum]
COG	YP_005371429.1	1.00E-13	metallophosphoesterase [Corallococcus coralloides DSM 2259]
Swissprot	tr\|Q5MAU8\|PPA27_ARATH	1.00E-54	Probable inactive purple acid phosphatase 27 (Precursor)
trEMBL	tr\|A0A072V9W1\|A0A072V9W1_MEDTR	7.00E-60	Purple acid phosphatase {ECO:0000256\|RuleBase:RU361203}

Sequence

Transcript Sequence

>Glyur004161s00039872.1
GGTTCTCACGTCTGGAGTAAGAAGTATTCATTCAAGGCATCCCCATATCCTGGACAGAACTCATTGCAACGTGTTATCATATTTGGTGACTTGGGAAAGGCTGAGCGTGATGGTTCAAATGAATATGCTGATTATCAACCTGGTTCACTTAACACCACAGACAAGCTCATCAAGGATTTACACAATATTGACATTGTTTTCCACATCGGAGATCTGCCATATGCAAATGGATACATCTCACAGTGGGACCAATTCACAGCTCAAGTGCAACAAATTTCGTCAACAGTCCCATACATGATTGCAAGGTTCGTTTGAGTGCAGTCATTTCATGCCATTGACATTTAAATTAAGTTTTACATATTCTTGGACTGAAGAATATCCCGTTTATTCATACTGTAGTGGAAATCATGAACGTGATTGGCCAAACACAGGATCCTTTTACGACACTCCGGATTCAGGTGGGGAATGTGGAGTTCCTGCAGAAACCATGTACTATTTTCCTGCTGAGAACAGAGCCAAATTCTGGTATGCAACAGATTATGGCATGTTTCGTTTCTGCATAGCAGATAGTGAGCATGACTGGAGAGAGGGATCAGAACAGTACAAATTCATTGAGCATTGCCTTGCAACAGTAGATAGAAAGCATCAACCATGGTTAATCTTTTCAGCTCATCGTCCCCTTGCATACTCCTCTAATGCTTGGTATGGCACGGAGGGCTCATTTCAAGAGCCCATGGGAAGGGAAAGCTTGCAGGGGCTTTGGCAGAAGTACAAAGTAGACATTGCATTTTATGCCCACGACCATCACTACGAAAGAGTATGCCCCATTTATCAGAATCAATGCGTGAATTCAGAAAAATCTCATTACTCTGGCACTGTGAATGGAACAATTCATGTTGTTGTGGGTGGAGGGGGTAGTCACTTGTCAGACTTCACCACAGTTCCTCCGGTTTGGAGTATTTACAGGGACCGAGACTACGGGTTTGGCAAACTGACAGCATTCAATCACTCATATCTCCTGTTTGAGTACACGAAAAGTAGTGACGGAAAGGTCTACGACTCTTTTACCATTTCAAGGGACTATAGAGATGTCTTGGCCTGTGTGCACGATGGTTGTGAGAAAACCACCTTGGCAACCTGAATTTCGTGTTTATGTTGTAGGTCATGAAATTAAATAAAATATTGNCAAAATAAATAACGGTTGTTATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04161	3	1869	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004161s00039872.2	PF00149.23	Metallophos	23	161	4.80E-09
Glyur004161s00039872.2	PF14008.1	Metallophos_C	186	246	1.40E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	43.201
SRR1783600	control	40.704
SRR1783602	moderate drought stress	15.056
SRR1811619	moderate drought stress	12.898

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	63.144
DRR006520	Root Summer glycyrrhizin high producing strain	67.740
DRR006521	Root Winter glycyrrhizin high producing strain	2.798
DRR006522	Root Winter glycyrrhizin high producing strain	3.255
DRR006523	Root Summer glycyrrhizin low producing strain	10.515
DRR006524	Root Summer glycyrrhizin low producing strain	10.510
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.717
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.192

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	43.890
SRR2868004	Drought Stress (root)	45.403
SRR2967015	Control (root)	57.562

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.965
SRR9715740	Leaf	0.948
SRR9715741	Leaf	3.240
SRR9715739	Root	6.562
SRR9715742	Root	38.546
SRR9715743	Root	32.147

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.181
SRR8749028	MeJA induced 9h	4.344
SRR8749029	MeJA induced 9h	0.665
SRR8749030	Uninduced	23.475
SRR8749031	Uninduced	9.234
SRR8749032	Uninduced	6.844

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.854
SRR8400027	Control - Root	48.200