Gene detail

Gene detail information of Glyur004100s00047070

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07040.1	1.00E-98	NB-ARC domain-containing disease resistance protein
NR	KEH33986.1	0	LRR and NB-ARC domain disease resistance protein [Medicago truncatula]
COG	YP_001869729.1	1.00E-09	hypothetical protein Npun_R6524 [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q39214\|RPM1_ARATH	3.00E-114	Disease resistance protein RPM1
trEMBL	tr\|A0A072UX30\|A0A072UX30_MEDTR	0	LRR and NB-ARC domain disease resistance protein {ECO:0000313\|EMBL:KEH33986.1}

Sequence

Transcript Sequence

>Glyur004100s00047070.1
ATGTGTGATCCTGCGTTGTCCCTAGCTCGCGATCACTTGCTTCCACTTGCTCGCAATCACTTGCTTCCACTGTTATTGGAAGCAGCCGATATGATAAGGGGGATCCCAAAAGAAGTTGCAAACTTGAAAGCTGAGCTAGAAAAAATCGAAGCTTTCATCAATGATGCAGATAGAATTGTTGAAGCTGAAGAAGACAACAACACACGTGACGAAACCAAGAAATGGGTGAAGCAGCTGAGAGAAGCAACTTTTCTCATAGAAGATAAGCTTCGAGAGGATCCTCTTTACATGGAAGAAGCTGCTATTGTGGGCTTTGAAGCCCCACATGCTAAATTGATTGGTTGGTTGGTAAAGGGAAGAACTAAGCGCACTGTCATCTCTGTGATAGCAATGGGAGGGCAAGGAAAAACCACTCTTGCCAAGAAAGTTTTTGATAGCAAGGAGGTGACTGGCCACTTCAATTGTCGTGCATGGATCACAGTGTCTCAATCATACACAGAAGTGGGGTTGCTGAGGGATATGTTGCTACAGTTTCACAAACAAGCAGGGACATCTCCTCCTCAAGATGTTTTTGGAATGGATCGAAGGTTATTGATTGAAGAAGCGAGAAACTACTTGCGGCAAAAGAGGTACATGATCATGTTTGATGACGTATGGAACATACATTTTTGGAATGATATTCAACATGCTGTAATTGATAATAAAAATGGAAGCAAGATATTTATCACAACAAGGAACATACATGTTGTCTTGTCTTGTAAGGAATCTTCTTTTGTTGAAGTGTATGAGCTGCAACCTTTAACTGAAAAACAATCTTTGGAGCTATTACATAAGAAGGCATTCTATGACTTGAATGGATGTTGTCTGGAAAATCTTATGAACATATCTTCCAAAATTGTTGAAAAATGTAAGGGTTTACCACTAGCAATTGTGGCAATTGGTGGTCTTTTATCTGGCATAGATAAAGATGCAATTGAATGGAATAAGTTTAGTGAAAGTCTAAGTTTAAAGCTAGAGAAGGATTCCCATTTAAGTGGAATAATAAAAAATATTTTAGGTTTGAGTTACAANGACTTGCCTTACCATCTTAAGTCATGCTTGTTGTATTTTGGAATATATCCCGAAGACTATGTAGTTAAATCAAAGAGACTTATTCGGCAGTGGATAGCCGAAGGGTTTGTGAAGGGAGAAATGGGGAAGACTTTGGAAGAAGTTGCAGAAGGGTATTTGAAAGAGTTGATCCGTAGAAGTTTGGTGCAAGTATCTTCAACTAGCATTGATGGCAAAGCTAAACATTGTCATGTTCATGATCTAACACGTGTGATGATTCTTGAGCAATTTGAGAATCTAAGTTTTTGCCGACATATTGCTGAAGATGGTCAGTCACCCTTAAGTGGAATAAGTCGGCGACTATCAATAGCAACTGGTTCCTATGATTTAATGGCAAGTATTGAAAGCTCACATGTTCGGTCATTGCTTCTTTTCACAAGTGAAGAATTATCTGAGTACTTTGTTAGGAGAATCACTACAACATATAAGCTANTGAAAGTGCTTGATTTTGAACATGCTCAATTTTTTAATGTTTCTGAAAATTTGGGAAGTTTGATCCACTTGAAGTATTTAAGCCTCAGGCATTCAAAGATAGAACAAAGGGAGCTTCCAAAGTCTGTTGGCATGCTCCAAAACCTTGAGACCTTGGATCTAAGGGAAACAGGTTTCTATGAGATTCCAAAGGAGATTAGCAAGCTTGGACAGTTACGACATCTTCTCGGTCGCAAAATGTCTTTGATTCAATTGAAGGGTGATATTGGAGGCATGACATCCCTACAGACGCTATGTTTTGTTAATTTAGATNGGGATGTAGAGCTAATTAGAGAGCTAGGAAAGCTTAAGCAGATGAGGAAATTGGGTTTGCTTCGTGTTGAGGGAGAATATGGGAGCATTCTATCTTCCTCAATCAATGAGATGCAATACTTGGAAAAACTACATATTGCAAAAAAAATATCAAGAGATGAAGAAGTGCTTGATTTGCATTTTATTTCATCCCCACCCATGCTTCGAGATCTTAGACTGCTTGCAAAGTTAGAGAAATTGCCGAAGTGGATTCCGAAGCTTCAAAATCTTGTTAAGTTGACCTTGGCATTCTCCCATATAACTAATGACCTAATGAAATCACTAGGAAATATGCAAAACTTGTTGTCCCTCTCTATTTCCCAAGATGCATATAAAGGTGAATGTTTACATTTTCAAGATGGGGGGTTTCAGAAATTGAAGGAACTATGCCTTCAAGACTTGAATAACTTGAATTCTATCATTATCGACAAAGGAGCATTGTATTCTNTGAAAAAGCTTGAGTTATTTGATATCCCCCGACTCAAGATAGTACCCACTGACATCCACCACTTAAGAAAGCTTGAAGTTCTCAATATTTGGGATATGCCAGATGAATTTGTAGAGAGCATTGCTCCTGATGGAGGAAAAGAGCACTGGATCATCGAGCATGTGCCCCATGTAGAAATTGATATCTGTTTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04100	7573	10571	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004100s00047070.1	PF00931.17	NB-ARC	109	395	9.50E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.712
SRR1783600	control	0.642
SRR1783602	moderate drought stress	0.869
SRR1811619	moderate drought stress	0.794

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.076
DRR006520	Root Summer glycyrrhizin high producing strain	0.085
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.087
DRR006524	Root Summer glycyrrhizin low producing strain	0.130
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.311
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.310

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.762
SRR2868004	Drought Stress (root)	10.169
SRR2967015	Control (root)	8.812

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.177
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.594
SRR9715739	Root	0.000
SRR9715742	Root	1.249
SRR9715743	Root	1.068

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.436
SRR8749028	MeJA induced 9h	0.700
SRR8749029	MeJA induced 9h	0.086
SRR8749030	Uninduced	0.482
SRR8749031	Uninduced	0.759
SRR8749032	Uninduced	0.335

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.263
SRR8400027	Control - Root	1.701