Gene detail

Gene detail information of Glyur004096s00043837

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G66920.2	6.00E-47	Protein kinase superfamily protein
NR	KEH40361.1	0	receptor-like kinase [Medicago truncatula]
COG	YP_001958461.1	2.00E-18	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q3ECH2\|Y1670_ARATH	3.00E-50	Probable receptor-like protein kinase At1g67000 (Precursor)
trEMBL	tr\|A0A072VFM0\|A0A072VFM0_MEDTR	0	Receptor-like kinase {ECO:0000313\|EMBL:KEH40361.1}

Sequence

Transcript Sequence

>Glyur004096s00043837.1
ATGCTAGCATTGCTAATGCTGCTGCTTCTGAATCTTGGGAATGGCTATAATGGCTCGTCTACTGGGTGTCCCTTCCATCTTTCTTGTACACATAAAAGGAAGATGCTTGAACTGCCCGCAGATCCAGTCCCTGTAAAACTCCGCGTAAGTCACATTGATTACGGATCACAAACATTAGAAGCATATGACCCTGAAAACTGTCTTCCGCAACTCTTACTTGGACTCAACTTTTCATCAATTTTTACTTTCCTGGGTTTTTTCTCGCAATTGGATTTTACGGAAAGAAGTAGCAACGATAATATTACTTTCTTCGATTGTTCTTCAGTAGAGCAACGACATCCGAGAAACAGATATGAATATGGCTATGGGCAAGATTTGTTATCTTGCCCGATTTATGCCACTAGCTCGTATGAAAGTATCGTTGATTTGGACGTTGTATCCTGCACCAAACTGAGTGACATCGTTGTGCCATCAGAGAAATTTCAGATACAGGGAAACTCACTCTCCTTGAACTGGTCGGAGACAAATTTTGACAGAGGATGCTTAGAATGTAAGCACAAATCAAAGAAGAAGAACAAATACGCTATTTTATCTGCTGTAGGTGTGATCATTGGTTCATCTGTGCTGGCGCTTGTGCTCGGTGCCATCCTTCGCATATATCGCTATTTTAAGACGAAAGGCGAGGATCATGCAAGAATCGAAAACTTCTTGAGGGATTACAGAGCTTTGAAGCCAACCAGATTCTCCTATGCCGATATCAAGAGAATCACACATCAATTTAAGGAAAAGCTCGGTGAAGGAGCTCATGGAGCTGTCTACAAAGGTAAACTATCCAGCCAAATTTTGGTCGCTGTGAAGATGCTCAATAACACAGAGGGAGATGGGACAGAGTTCATCAATGAAGTGGGAACCATGGGCAAAATCCATCATGTCCATGTGGTTCGCTTGCTTGGCTTCTGCGCCGATGGATTTTACCGAGCTTTGGTCTATGACTTTTTCCCAAATGGTTCCCTGCAGAATTTCATTTCTCAACCGAATAACAAGGATACTTTTCTTGGATGGGACAAGTTGCAACAAATTGCTCTGGGCATAGCCAAAGGAGTTGAGTATCTTCACCAGGGTTGTGACCAAAGAATTCTCCACTTTGACATCAACCCTCACAACGTCTTGCTAGATGACAATTTCACCCCAAAAATTTCAGACTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04096	16235	17584	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04733	IRAK4	EC:2.7.11.1	NF-kappa B signaling pathway	map04064
			Toll-like receptor signaling pathway	map04620
			Toll and Imd signaling pathway	map04624
			NOD-like receptor signaling pathway	map04621
			Neurotrophin signaling pathway	map04722
			Pertussis	map05133
			Tuberculosis	map05152
			Measles	map05162
			Influenza A	map05164
			Toxoplasmosis	map05145
			Leishmaniasis	map05140
			Chagas disease (American trypanosomiasis)	map05142

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004096s00043837.1	PF07714.12	Pkinase_Tyr	259	402	2.90E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.236
SRR1783600	control	0.167
SRR1783602	moderate drought stress	0.283
SRR1811619	moderate drought stress	0.185

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.089
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.142
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.774

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.070
SRR2868004	Drought Stress (root)	0.020
SRR2967015	Control (root)	0.232

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.860
SRR9715740	Leaf	18.830
SRR9715741	Leaf	10.126
SRR9715739	Root	0.331
SRR9715742	Root	0.759
SRR9715743	Root	0.326

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.355
SRR8400027	Control - Root	0.358