Gene detail

Gene detail information of Glyur004085s00043431

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G04210.1	3.00E-86	plant UBX domain containing protein 4
NR	XP_003546168.1	3.24E-152	PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Glycine max]
Swissprot	tr\|Q7Y175\|UBAX1_ARATH	6.00E-89	UBA and UBX domain-containing protein At4g15410
trEMBL	tr\|I1MFL0\|I1MFL0_SOYBN	1.00E-152	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G11860.1}

Sequence

Transcript Sequence

>Glyur004085s00043431.1
GCGAGGGGCCCGGCCCAGGATGCAAAGCAGAGAGTTAAACGGCGTCGTATGATCCAGTTAANTACGCGCCTGGGATGAGCGTGGTGACTGTAGAAGAGATTCGCGGGCGAGACGAGAAAGTGAGAAACAAAGAACGAGATATTCTCTCTATTTTTCTCAGTGAGCGAGTGAGTCTCGCTTGGCAACGACGAAATCGATGGCGTCGAGGGACAAGAAAGCATCGAAACCCTCGAGCTCGAACAGCCGTACTGGTAGGATCCGTACACTCTCCGATCTGAACCGTCCATCGGCGGACTCCGACAGTGACTCCGATGACCCTCAGGAGTATTACACCGGCGGCGAAAAGAGTGGAATGCTTGTCCAGGATCCTTCAAAAGGCAATGACGTGGATGCAATTTTCAATCAAGCAAGGCAACTTGGAGCTGTAGAAAGGCCAATTGATCAACTTCAGGAGCCACCAAGGTCAACAAGCTTTACTGGAACTGGCAGGTTACTCTCGGGTGAATCTGTAGAATCTGCTCCTCAGCAACCTGAGGCTGTTGTTCACAACATTAGCATAAAAAAATCCGAGTGTCCAAAAGAGCTTGAACCTGCAGATAGGAGGTCATCTGTTAATGTTAACCTCATAAGGAGGAATGAGAAGTATCCTGAACCCGAAAAGCGCCATGTACCATTTCAGGGTGTGGGTAGAACTCTAGGAAGCAGCTCTACTTCAGTGGCACCTGGGCCAACTGCTACCTCAGCACCTTTCACCACTGCTCCAACCCCTACTGCCGGCCTTGTGGTGGATCAGTCATTGCCATCAACCTCAATACAACTTAGGTTAGCTGATGGAACCCGCTTGATATCACATTTTAATTATAACCACACGGTCGGGGATATTCGCACCTTCATTGATGCATCTAGATCTGGGGGTGGGAGGAATTATCAACTTCAGATGATGGGTTTTCCCCCAAAGCNTCTCTCGGATGAAACTCAGACTATAGAGCAGGCTGGACTGGCGAATTCAGTTGTCATCCAGAAATTCTAGCAAGCTGCAGAAAAACTGCTGCTTTGTGGGATTGACCAGCTTAAATGCTGTATAAAGGAAACCAGTTTTCTCTGCTTAGAACCTGGCGGGGTTTTCTATTTATTGAGGTTTTGGACGTGAGGTCCTGTTATTAGCAAAGAAAGGGTGCGGGGTCATATTTTCTTGTCGCTAAAGTTTTTTTTTGTTTGTTTGTCAAATGATTAAATCACTTTAGGTTCTGTTGGATTGCTTAAATTTGGATCCCAACTCGTGTTTGGAGCAGGGTATGACAATTGTGCTTTTCCTCCCTGCTTGCTGGGCCTATTGTCGGAATTTGAAATGTATTTAACATAGTTGAAATGTAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04085	1401	5178	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004085s00043431.1	PF08059.8	SEP	120	165	3.80E-10
Glyur004085s00043431.1	PF00789.15	UBX	203	276	6.00E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	45.782
SRR1783600	control	45.080
SRR1783602	moderate drought stress	53.677
SRR1811619	moderate drought stress	53.621

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	95.140
DRR006520	Root Summer glycyrrhizin high producing strain	96.412
DRR006521	Root Winter glycyrrhizin high producing strain	145.651
DRR006522	Root Winter glycyrrhizin high producing strain	139.938
DRR006523	Root Summer glycyrrhizin low producing strain	99.158
DRR006524	Root Summer glycyrrhizin low producing strain	97.434
DRR006525	Leaf Summer glycyrrhizin high producing strain	35.173
DRR006526	Leaf Summer glycyrrhizin high producing strain	35.832

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	55.121
SRR2868004	Drought Stress (root)	53.003
SRR2967015	Control (root)	62.720

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	44.651
SRR9715740	Leaf	50.183
SRR9715741	Leaf	45.217
SRR9715739	Root	80.596
SRR9715742	Root	59.411
SRR9715743	Root	68.276

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.326
SRR8749028	MeJA induced 9h	26.263
SRR8749029	MeJA induced 9h	21.764
SRR8749030	Uninduced	12.411
SRR8749031	Uninduced	6.085
SRR8749032	Uninduced	10.861

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	55.729
SRR8400027	Control - Root	58.538