Gene detail

Gene detail information of Glyur004080s00040149

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03280.1	0	NRAMP metal ion transporter family protein
NR	XP_004493976.1	0	PREDICTED: ethylene-insensitive protein 2-like [Cicer arietinum]
COG	YP_826856.1	1.00E-57	Mn2+/Fe2+ transporter [Candidatus Solibacter usitatus Ellin6076]
Swissprot	tr\|Q9S814\|EIN2_ARATH	0	Ethylene-insensitive protein 2
trEMBL	tr\|B3GN62\|B3GN62_MEDTR	0	Sickle {ECO:0000313\|EMBL:ACD84889.1}

Sequence

Transcript Sequence

>Glyur004080s00040149.1
AAACAGCAAGACAAGAAGACCAATGGAGAGACCCCAAGAGGAAAAAAATGAATGGAAGAATATTCTACAATTTTTCCCCTTACAGACTTTCCAAAGCAAAAGTACCAATCCGCTGTAGCTGTAAAATGAGAAATATAGAAAACGGAGTGAAATAGAGAGAGTGGAAGAGGATTACAGAACCCTAATTGTACGGTGAAGAAATCCCTGTCATTCATTTGGAATTCGTGCAAATGTTCCTTGCTTTGCTTCTTCACCTGCACGCACCAGATCCACGCCAGCGTTTTTTCATTGCCTCTATTTGAGCTTTTTCACGTTTGTTGCAGGATTCAAGGAGTTCGAGGAGGAAGTGATTGGTTTGGTCAGGGGATCCTTTCTTTGACTACAATTGAGAATCGCCATAGCTCTCTCTGTGAAGCTTGACATCAATTGTTCAGTCATGTTGAGGAGATGGATGAAATAGTTAGTCGGAGTGTTGTGAAGAGATTTTGTGATGGCACACAGGTTGACTCGATTGAAAACATCAAATTTGTATCCGATGATCATAGTTAATGATTGATGTTATTATAGGCTGGTTGCTGGTATAAGAATAGGCTTTGTTTGCAAATTGCGAGTCTTTTTATCAGTTGGCTAATTATAGTTTGAATTTGAAGCTGTTTACATATCTACGATTGACTTGTTGTAATATATAGAATCTTTTGATAGAAATATAGTTAAGACGTACTTGTACAATTATCTATGGGTCATTGAGAGTTGTAGCAACTTCAAAGTGTTTGTCTGAGTTTCATATTTTTTTTGGGCCTTATCCTTGGTGGTACTGTGCCAAAGAGTAAAATGGAAGCAGATACATTGAGTACTAAACAGCCAAAGAGTAATATGGAAGCAGAGACATTGAGTACCAACCACTCTCCTGGCTTTCTTAGCCGGTCACTTCCGGCTGTTGTACCTATGCTTTTGATTTCGATAGGATATGTTGACCCTGGAAAGTGGGTNGCAACTGTTGAAGGTGGTGCAAGGTTTGGTTTTGATCTGGTGGCTTTCACGCTTATTTTCAATTTTGCCGCTATCTTCTGTCAGTACTTATCTGCAAGGATTGGTGTGATCACAGGAAGAGATCTCGCTCAGATTTGCAGTGATGAGTATGATACATGGACATGCATGCTCCTTGGAATTCAAACAGAACTTTCAATGATTATGCTAGATCTTAACATGATCTTGGGCATGGCACAAGGATTAAATCTTATTTTTGGGTGGGACTTGTTCACTTGTGTCTTTTTAACTGCTACAGGTGCTGTTTTTAATATACTTCTTGCTGTCCTACTTGACGTTGGGAAGGCAAAACTCCTAGGCCAGTTTGTGGCAGGCTTTGTGTTGCTTTCTTTCATACTTGGACTACTCATCAATCAACNGGAAATTCCGCTTTCCATGAATGGAGTACAATTGAAGTTGAGTGGGGAGAGTGCATTTGTGCTAATGAGTCTTCTAGGAGCAACTCTTGTGCCTCACAACTTTTACCTTCATTCCTCTATTGTACAGTGGCATCAGGGACCAACAAACATTTCTAAAGATGCATTGTGTCATAACCATTTTTTGGCCATCTTANGTGTCTTCAGTGGTCTTTTTTTGATAAATAATATGCTGATGACCGCATCAGCAANTGAGTTCTACAATACTGGTCCTGTTTTGCTTACTTTTCAGGATGCTCTGTCACCAATGGAACAGGTGTTGCGTAGCCCAACAGCTCTGCTTGGCTTTTTACTCATTTTGTTTCTTGCAAATCAAACCACAGCATTAACTTGGAGTTTAGGTGGAGAAGTAGTAGTGCATAGTTTCTTAAAACTGGATATTCCAGGTTGGCTTCATTATGCAACAATTAGAGTGATTGCTGTTCTGCCTGCCCTTTATTGTGTTTGGAGTTCAGGAGCTGAAGGGATGTATCAGTTACTTATATTCACTCAGGTTTTGGTAGCTCTGCAACTTCCATCATCTGTGATCCCCCTTTTTCGAGTTGCTATATCTAGATCAATAATGGGTGCCCACAAGAGCTCCCAGTTTGTGGAACTTTTGGCATTGATCATATTCATTGGGATGCTTGGCTTGAATATTGTCTTTTTGGTAGAAATGATATTTGGCAATAGTGATTGGGTGGGTGATTTAAGATGGAATGTGGGGAATGGTATGTCTGTCTCATATTTAGTTCTTCTTACNGCTGCTTTTACATCATTATGTTTCATGCTTTGGTTAGCTGCCACACCATTGAGATCTGCCAATGTCCAATTAGATGCTCAGGTGTTGAACTGGGGTATGCCTGAGACTGTACCGAATCCTCCGGTTGATGGTGAGGAATCATATTTAACTGAAACAGGGTGTCATGAAGATGCACCTGTTGAGGTAGAGGAACCAACACCGGCTTTAGCTAGGACCTTGGAGTACTCAGATGTATCACTTGCAAGTTTTCATCCNGATCTACCTGAAACCATAATGGAACCTGATCCCCAAGTGAATGCTGTAAGGGAGAATCATTCTGTTACACCATCAGCTTCCACATCAGAGTCAGAGGCAGTATCAACTGTAGTTAATGAGAGTTCTGATTCTAGGTTGGAAGAGACCAAAACTATAAAAATGGAAACAAGTGCCCCGATTGAGAAGACTGTGGAAGTTGAAGGAGATTCAAATGCTGAAAGGGATGATGATGATGGAGACTCATGGGAAACTGAAGAATCATCCAGTACTGTCTTGGCAAATGCCNCATCTTCAACATCAGATGGCCCTCCGTCATTCAGGAGTATTAGTGGGAAAAGTGATGAAGGTGGGAATAGCCTTGGAAGTCTATCAAGAATAGAAGGCTTAGGTCGTGCTGCGAGACGTCAGCTAGCTGCTGTTCTTGATGAATTCTGGGGACAGCTTTATGATTTCCATGGGCAAGCAACCCAGGAAGCAAAGGCTAAGAAAATTGATGTTTTGCTAGGACTGGGAGTAGATTCAAGACCCACCGGTTCCTTGCAGAAAGTGGATGCATGTGGAAAGGACTATTCTGAATACTTAGTATCGGCAGGAGGTAGAGCTTCCGACACTTCAACTAACTCTGGTCCGTATGACTATTCCAGGCAGCCTAGGATGCAAAGTAATTTAGAGTCTTCATATGGTCCTCAAAGGAGTTCTTCCTCAACGCTGGCAAATCCCATCCAGTTATTAGATGCATATGTACAGAATTCCAGCCGCAATCTCCTTGATTCTGGTGAGAGGCGCTATTCAAGTGTGCGCAATATACATTCGTCTCAGGCTTGGGATTATCAACCGGCTACCATACATGGTTATCAGACTGCATCCTATCTTAGCCAGGTTGTTAAAGATAGAAATTCTGATAACTTAAATGGTCCAATGCAATTGTCATCACTTAAATCCCCTTCCATAGGCAATACAAACCACAGGGATTCCCTTGCATTTGCTTTGAGAAAAAAGTTGCACGATGGTTCAGGTGTAAGCCAACCCCCTGGGTTTGAAAACGTAGCTGCCTCTAGAAGTCGCCAACTGCAATCTGATAGGTCCTATTATGATTTTTGCTCTTCCAGACCTGCCGATAATACAGTCAATTCAGTTAATACTAAGAAGTACCACAGCTTGCCGGACATTTCAGGATATTCCATCCCCCACAGGGCTGGTTATGTGTCTGATAAGAATGCTCCACGGGATGGTTCTGCTGGATATGGTTCTTTTGCTGGTAGGATGAGTTTTGAACCATCATTATATTCAAATTCTGGATCAAGAACAGGAGCTCATTGGGCCTTTGATGAAAACTCCCCATCAAAAGTTTACAGAGAGGCACTCTCTTCACAGTTGAGTTCTGGTTTTGATACTAGATCCCTCTGGTCTAGACAGCCTTTTGAGCGGTTTGGGGTAGCTGATAAAATTCATAATGTTGCAATGGAAGGCGCAGGAAGTAGGCCTAATGCAATTGCTCAAGAAACTACATTTGTGGATATAGAGGGGAAACTTCTTCAGTCTGTTAGACTTTGCATCATGAAGCTCTTAAAACTGGAGGGGTCTGATTGGTTGTTTAAACAAAATGATGGAATTGACGAGGATCTGATTGACGGTGTAGCTGCAAGGGAGAAATTTGTTTATGAAATTGAATCTAGGGAGATGAATCAGGTCATTCATATGGGTGAAGCTCANTATTTTCCTTCTGATGGGAAATCTGGTTCTTCGATTAAAAACAATGAGGCAAGTTCCTGTAGTTTTTTGGTTTCCTCGGTTCCTAACTGTGGGGAGGGATGTATATGGAAATTAGATTTAATAATAAGCTTTGGGGTGTGGTGTATCCACCGTATCCTTGACCTCTCACTTATGGAAAGCCGGCCAGAGCTTTGGGGGAAATACACCTATGTGCTCAATCGCCTCCAGGGCATCATTGAACCAGCTTTTTCTAAGCCTCGTAGTCTTTTGTCCCCATGCTTTTGCCTTTCCCAAGTTCCCATGACACATCTACAAAAGTCAAGTCCTCCTCTTTCCAATGGGATGCTACCCCCAACTGCAAAACCAGGCCGGGGCAAATACACCACTGCATCAATGTTGCTCGAGCTGGTGAAGGACGTGGAGATCGCGATATCTAGCCGGAAAGGACGTACTGGTACTGCAGCTGGTGATGTGGCTTTCCCAAAGGGGAAGGAAAATTTGGCGTCCGTTCTCAAACGGTACAAGCGGAGGTTATCAAACAAGTGCCTTGGCACTCAGGAAGGGACTGGTTCTCGCAAGATCCCCGCATCAGCACCATACAACTAATAGCATATTGCATCAACAAACTCATGTTTCCGTGTATCAAATTCCTTGTATGTTACATACACATAGGGCAAGAATTATATGCAATTTGCTGAAAAATCAAGTGAAAGATGGATANATGGAAAATTAGTTCCACTGTTTTTGTTTTTCGTTATTTATTTAGTTAGTTAGTGGATAGAAGGCAGGGAAACAAAATTAAGCTTTGACACGATTGTTTCATTAAATAACTTTTTGTATACA

Protein Sequence

>Glyur004080s00040149.1
MEADTLSTKQPKSNMEAETLSTNHSPGFLSRSLPAVVPMLLISIGYVDPGKWVATVEGGARFGFDLVAFTLIFNFAAIFCQYLSARIGVITGRDLAQICSDEYDTWTCMLLGIQTELSMIMLDLNMILGMAQGLNLIFGWDLFTCVFLTATGAVFNILLAVLLDVGKAKLLGQFVAGFVLLSFILGLLINQXEIPLSMNGVQLKLSGESAFVLMSLLGATLVPHNFYLHSSIVQWHQGPTNISKDALCHNHFLAILXVFSGLFLINNMLMTASAXEFYNTGPVLLTFQDALSPMEQVLRSPTALLGFLLILFLANQTTALTWSLGGEVVVHSFLKLDIPGWLHYATIRVIAVLPALYCVWSSGAEGMYQLLIFTQVLVALQLPSSVIPLFRVAISRSIMGAHKSSQFVELLALIIFIGMLGLNIVFLVEMIFGNSDWVGDLRWNVGNGMSVSYLVLLTAAFTSLCFMLWLAATPLRSANVQLDAQVLNWGMPETVPNPPVDGEESYLTETGCHEDAPVEVEEPTPALARTLEYSDVSLASFHPDLPETIMEPDPQVNAVRENHSVTPSASTSESEAVSTVVNESSDSRLEETKTIKMETSAPIEKTVEVEGDSNAERDDDDGDSWETEESSSTVLANAXSSTSDGPPSFRSISGKSDEGGNSLGSLSRIEGLGRAARRQLAAVLDEFWGQLYDFHGQATQEAKAKKIDVLLGLGVDSRPTGSLQKVDACGKDYSEYLVSAGGRASDTSTNSGPYDYSRQPRMQSNLESSYGPQRSSSSTLANPIQLLDAYVQNSSRNLLDSGERRYSSVRNIHSSQAWDYQPATIHGYQTASYLSQVVKDRNSDNLNGPMQLSSLKSPSIGNTNHRDSLAFALRKKLHDGSGVSQPPGFENVAASRSRQLQSDRSYYDFCSSRPADNTVNSVNTKKYHSLPDISGYSIPHRAGYVSDKNAPRDGSAGYGSFAGRMSFEPSLYSNSGSRTGAHWAFDENSPSKVYREALSSQLSSGFDTRSLWSRQPFERFGVADKIHNVAMEGAGSRPNAIAQETTFVDIEGKLLQSVRLCIMKLLKLEGSDWLFKQNDGIDEDLIDGVAAREKFVYEIESREMNQVIHMGEAXYFPSDGKSGSSIKNNEASSCSFLVSSVPNCGEGCIWKLDLIISFGVWCIHRILDLSLMESRPELWGKYTYVLNRLQGIIEPAFSKPRSLLSPCFCLSQVPMTHLQKSSPPLSNGMLPPTAKPGRGKYTTASMLLELVKDVEIAISSRKGRTGTAAGDVAFPKGKENLASVLKRYKRRLSNKCLGTQEGTGSRKIPASAPYN

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04080	4591	13276	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004080s00040149.1	PF01566.13	Nramp	52	405	1.20E-82
Glyur004080s00040149.2	PF01566.13	Nramp	52	405	1.20E-82
Glyur004080s00040149.3	PF01566.13	Nramp	52	129	5.10E-21
Glyur004080s00040149.3	PF01566.13	Nramp	139	368	3.10E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.594
SRR1783600	control	22.638
SRR1783602	moderate drought stress	27.443
SRR1811619	moderate drought stress	27.528

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.926
DRR006520	Root Summer glycyrrhizin high producing strain	31.795
DRR006521	Root Winter glycyrrhizin high producing strain	24.375
DRR006522	Root Winter glycyrrhizin high producing strain	23.264
DRR006523	Root Summer glycyrrhizin low producing strain	34.647
DRR006524	Root Summer glycyrrhizin low producing strain	34.340
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.200
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.631

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.756
SRR2868004	Drought Stress (root)	51.128
SRR2967015	Control (root)	55.038

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.329
SRR9715740	Leaf	28.678
SRR9715741	Leaf	26.609
SRR9715739	Root	7.405
SRR9715742	Root	37.952
SRR9715743	Root	33.507

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.224
SRR8749028	MeJA induced 9h	14.258
SRR8749029	MeJA induced 9h	8.339
SRR8749030	Uninduced	8.083
SRR8749031	Uninduced	5.334
SRR8749032	Uninduced	6.142

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.491
SRR8400027	Control - Root	39.073