Gene detail information of Glyur004079s00039153 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G24050.1 | 9.00E-19 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | KEH21289.1 | 9.37E-25 | NAD(P)-binding rossmann-fold protein [Medicago truncatula] |
| COG | YP_001830924.1 | 2.00E-08 | short-chain dehydrogenase/reductase SDR [Beijerinckia indica subsp. indica ATCC 9039] |
| Swissprot | tr|Q6RVV4|TIC32_PEA | 1.00E-09 | Short-chain dehydrogenase TIC 32, chloroplastic |
| trEMBL | tr|A0A072TUU0|A0A072TUU0_MEDTR | 3.00E-25 | NAD(P)-binding rossmann-fold protein {ECO:0000313|EMBL:KEH21289.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04079 | 8599 | 10916 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 32.253 |
| SRR1783600 | control | 32.693 |
| SRR1783602 | moderate drought stress | 19.046 |
| SRR1811619 | moderate drought stress | 18.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.195 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.062 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.893 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.113 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.238 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.144 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.553 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.708 |
| SRR2868004 | Drought Stress (root) | 5.620 |
| SRR2967015 | Control (root) | 4.960 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.548 |
| SRR9715740 | Leaf | 0.498 |
| SRR9715741 | Leaf | 0.975 |
| SRR9715739 | Root | 2.917 |
| SRR9715742 | Root | 5.626 |
| SRR9715743 | Root | 5.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.268 |
| SRR8749028 | MeJA induced 9h | 0.728 |
| SRR8749029 | MeJA induced 9h | 0.058 |
| SRR8749030 | Uninduced | 0.321 |
| SRR8749031 | Uninduced | 0.602 |
| SRR8749032 | Uninduced | 0.386 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.885 |
| SRR8400027 | Control - Root | 5.518 |