Gene detail

Gene detail information of Glyur004079s00039151

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G24050.1	5.00E-136	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_003530511.1	0	PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like isoform 1 [Glycine max]
COG	YP_002462215.1	6.00E-49	short-chain dehydrogenase/reductase SDR [Chloroflexus aggregans DSM 9485]
Swissprot	tr\|A2RVM0\|TIC32_ARATH	3.00E-87	Short-chain dehydrogenase TIC 32, chloroplastic
trEMBL	tr\|I1KPN7\|I1KPN7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G02980.1}

Sequence

Transcript Sequence

>Glyur004079s00039151.1
GATAGCTACATCACTTTTCATTTCTATAGCCCTCCTTTTCCTTCTTTCTNTCTGACCACTTTCTTCAATTACCGGCCCTCATTTCCTTTCTTTGTTCTGCACCCTGTGTTTGAGGTTTAATGCAGAGCCGTATTGCATTGCTTTTGTATCATAGCATTAGCATCTAGCTATCTACCTAGCTCGCTGCTGCAAAACCTGACAGTGAAAAAAGAGAACCACCTTTTTTATAACCAAACCCCCAAAACCAAACCCGTCACTTTCTCGATCACACACATCCATCGGANCAAGCACAAGGGAATTTCCATTCCACCCCTGGCCAATTAGTTATTGTTGATTGGAGTAACGTTCGTTATTCCACGCCAAACCCACAAATTAACAACCCCNTCTAACTAATTATAAGATGCTGGAAACGGTTAAGTACCTGATCGGGTCGGCGGGTCCCAGCGGCTTCGGGTCGAAATCCACCGCCGAACAGGCCACGGAAAGCTGCGGCGATCTCCGCTCCATCACCGCCATCATTACCGGTGCTACGTCTGGAATCGGGGCTGAAACGGCGCGTGTGTTGGCGAAGCGTGGGGCGAGGCTGGTTCTGCCGGCGCGTAGCATGAAGGCCGCGGAGGAAGCGAAGGCTCGCATAGTGTCGGAGTGCCCTCACTCGGAGATTATTGTTATGCCTCTCGATCTCAGCTCTCTCAATTCCGTTAGAAACTTCGTTGTTCAGTTTCACTCCCTCCGTTTCCCTCTCCATCTCCTCATAAACAACGCTGGAAAGTTTGCACATGAGCATGCAATCTCCGAGGATGGTGTTGAAATGACCTTCGCCACTAATTATCTAGGTCATTTTCTGTTAACAAAGCTGTTGCTGAACACGATGGTTGAAACGGCAAAGAAGACAGGGGTACAAGGGCGGATCGTGAACGTGTCGTCCAGCATACACGGGTGGTTTTCCGGAGATCTGTTCTCGTACCTGGCTCTCATAAGCCGCAACAAAAGCAGCAGCCATTACGACGCCACACGTGCCTATGCTCTTTCCAAGCTCGCCAACGTTTTCCACACCAACGAGCTTGCCCGCAGGCTCAAGCAAATGGAGGCCAACGTGACTGTGAACTGCGTTCACCCGGGGATCGTGAGAACCAGACTCACTAGAGAGCGTGAAGGCTTCCTTACAGATTTAGTGTTCTTTTTGGCTTCCATGCTCTTAAAGTCGATTCCCCAGGCAGCTGCAACGACATGTTATGTGGCAACCCATCCAAGGCTCTTGAATGTGTCCGGCAAGTACTTTGCTGACTGCAACGAAGCCTCCACCTCCAAATTGGGATCCAACTCTATTGAAGCAGCAAGGTTATGGGCCGTTTCCGAATTCATGGTTTCTAGGGGTCCAAAAGCTGCTTTTGACCTATTCAATCACCTTGAATTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04079	2497	5943	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004079s00039151.1	PF00106.20	adh_short	37	189	2.70E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	140.860
SRR1783600	control	140.696
SRR1783602	moderate drought stress	76.667
SRR1811619	moderate drought stress	76.011

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.196
DRR006520	Root Summer glycyrrhizin high producing strain	24.108
DRR006521	Root Winter glycyrrhizin high producing strain	7.046
DRR006522	Root Winter glycyrrhizin high producing strain	6.976
DRR006523	Root Summer glycyrrhizin low producing strain	35.958
DRR006524	Root Summer glycyrrhizin low producing strain	35.511
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.783
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.795

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.888
SRR2868004	Drought Stress (root)	40.624
SRR2967015	Control (root)	40.343

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.598
SRR9715740	Leaf	0.831
SRR9715741	Leaf	0.306
SRR9715739	Root	44.406
SRR9715742	Root	60.050
SRR9715743	Root	58.355

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.633
SRR8749028	MeJA induced 9h	4.551
SRR8749029	MeJA induced 9h	7.279
SRR8749030	Uninduced	1.908
SRR8749031	Uninduced	0.830
SRR8749032	Uninduced	2.061

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	53.156
SRR8400027	Control - Root	53.434