Gene detail information of Glyur004074s00039646


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G40100.11.00E-57light harvesting complex photosystem II
NRXP_010095100.13.78E-84Chlorophyll a-b binding protein [Morus notabilis]
Swissprottr|Q9S7W1|CB4C_ARATH2.00E-72Chlorophyll a-b binding protein CP29.3, chloroplastic (Precursor)
trEMBLtr|W9QYC0|W9QYC0_9ROSA1.00E-84Chlorophyll a-b binding protein {ECO:0000313|EMBL:EXB58206.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold0407442435476-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0009765  photosynthesis, light harvesting


cellular_component

GO:0016020  membrane



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur004074s00039646.1PF00504.16Chloroa_b-bind671692.40E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.062
SRR1783600control16.091
SRR1783602moderate drought stress14.915
SRR1811619moderate drought stress13.657

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.560
DRR006520Root Summer glycyrrhizin high producing strain4.367
DRR006521Root Winter glycyrrhizin high producing strain4.133
DRR006522Root Winter glycyrrhizin high producing strain4.344
DRR006523Root Summer glycyrrhizin low producing strain10.087
DRR006524Root Summer glycyrrhizin low producing strain8.479
DRR006525Leaf Summer glycyrrhizin high producing strain657.477
DRR006526Leaf Summer glycyrrhizin high producing strain665.705

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)18.846
SRR2868004Drought Stress (root)17.668
SRR2967015Control (root)9.680

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf716.395
SRR9715740Leaf910.466
SRR9715741Leaf478.467
SRR9715739Root15.538
SRR9715742Root21.662
SRR9715743Root19.989

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.571
SRR8749028MeJA induced 9h14.513
SRR8749029MeJA induced 9h10.384
SRR8749030Uninduced5.854
SRR8749031Uninduced1.091
SRR8749032Uninduced8.775

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root28.623
SRR8400027Control - Root26.449

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved