Gene detail information of Glyur004074s00039645 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G05880.1 | 4.00E-21 | Low temperature and salt responsive protein family |
| NR | XP_007206183.1 | 1.37E-26 | hypothetical protein PRUPE_ppa013857mg [Prunus persica] |
| COG | YP_003059217.1 | 2.00E-13 | hypothetical protein Hbal_0826 [Hirschia baltica ATCC 49814] |
| Swissprot | tr|Q9ZNQ7|RCI2A_ARATH | 1.00E-27 | Hydrophobic protein RCI2A |
| trEMBL | tr|M5W0W3|M5W0W3_PRUPE | 5.00E-27 | Uncharacterized protein {ECO:0000313|EMBL:EMJ07382.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04074 | 1682 | 3659 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004074s00039645.1 | PF01679.12 | Pmp3 | 5 | 54 | 5.00E-23 |
| Glyur004074s00039645.2 | PF01679.12 | Pmp3 | 5 | 54 | 5.00E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.007 |
| SRR1783600 | control | 4.114 |
| SRR1783602 | moderate drought stress | 4.749 |
| SRR1811619 | moderate drought stress | 4.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 36.684 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 33.840 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 780.508 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 741.631 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 124.302 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 121.995 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 29.253 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 29.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.291 |
| SRR2868004 | Drought Stress (root) | 14.993 |
| SRR2967015 | Control (root) | 16.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 49.910 |
| SRR9715740 | Leaf | 48.043 |
| SRR9715741 | Leaf | 58.829 |
| SRR9715739 | Root | 13.420 |
| SRR9715742 | Root | 72.300 |
| SRR9715743 | Root | 57.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.003 |
| SRR8749028 | MeJA induced 9h | 12.714 |
| SRR8749029 | MeJA induced 9h | 8.199 |
| SRR8749030 | Uninduced | 16.580 |
| SRR8749031 | Uninduced | 8.465 |
| SRR8749032 | Uninduced | 8.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 36.475 |
| SRR8400027 | Control - Root | 36.439 |